LOCUS       NM_001014192            1818 bp    mRNA    linear   ROD 09-FEB-2025
DEFINITION  Rattus norvegicus transmembrane protein 39b (Tmem39b), mRNA.
ACCESSION   NM_001014192 XM_342927
VERSION     NM_001014192.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1818)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1818)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   3  (bases 1 to 1818)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC082025.1.
            
            On Apr 20, 2005 this sequence version replaced XM_342927.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC082025.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676784 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1818
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..1818
                     /gene="Tmem39b"
                     /note="transmembrane protein 39b"
                     /db_xref="GeneID:362608"
                     /db_xref="RGD:1359450"
     exon            1..106
                     /gene="Tmem39b"
                     /inference="alignment:Splign:2.1.0"
     CDS             103..1581
                     /gene="Tmem39b"
                     /codon_start=1
                     /product="transmembrane protein 39B"
                     /protein_id="NP_001014214.1"
                     /db_xref="GeneID:362608"
                     /db_xref="RGD:1359450"
                     /translation="MGGRRGPNRTSYYRNPLCEPGSSGASGGGHSSSASVSSVRSRSR
                     TTSGTGLSSPPLAAQTVVPLQHCKIPELPVQASILFELQLFFCQLIALFVHYINIYKT
                     VWWYPPSHPPSHTSLNFHLIDFNLLMVTTIVLGRRFIGSIVKEASQRGKVSLFRSILL
                     FLTRFTVLTATGWSLCRSLIHLFRTYSFLNLLFLCYPFGMYIPFLQLNYDLRKTNLFS
                     HVASMGPREAVSGLARSRDYFLTLRETWKQHTRQLYGPEAMPTHACCLSPSLIRNEVE
                     FLKMDFNWRMKEVLVSSMLSAYYVAFVPVWFVKNTHYYDKRWSCELFLLVSISTSVIL
                     MQHLLPASYCDLLHKAAAHLGCWQKVDPALCSNVLQHPWTEECMWPQGVLVKHSKNVY
                     KALGHYNVAIPSDVSHFRFHFFFSNPLRILNILLLLEGAVIVYQLYSLMSSEKWHQTI
                     SLALILFSNYYAFFKLLRDRLVLGKAYSYSASPQRDLDHRFS"
     exon            107..233
                     /gene="Tmem39b"
                     /inference="alignment:Splign:2.1.0"
     exon            234..453
                     /gene="Tmem39b"
                     /inference="alignment:Splign:2.1.0"
     exon            454..537
                     /gene="Tmem39b"
                     /inference="alignment:Splign:2.1.0"
     exon            538..692
                     /gene="Tmem39b"
                     /inference="alignment:Splign:2.1.0"
     exon            693..1029
                     /gene="Tmem39b"
                     /inference="alignment:Splign:2.1.0"
     exon            1030..1217
                     /gene="Tmem39b"
                     /inference="alignment:Splign:2.1.0"
     exon            1218..1338
                     /gene="Tmem39b"
                     /inference="alignment:Splign:2.1.0"
     exon            1339..1794
                     /gene="Tmem39b"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cccggtcggg ctgcggcggt tagtcctctc tcggccgccg tcgcctccga catattgccc
       61 gcaggagctg cggcggcgag cggagagcgc cgggggaagg agatgggagg acgaagaggt
      121 cccaacagga catcttacta tcgaaaccca ctctgtgaac caggatcgtc aggggcctcc
      181 ggtggaggcc actcttctag tgcatccgtg agcagtgtcc gttctcgaag caggaccact
      241 tctgggacgg gcctctccag ccctcccttg gccgcccaga ccgtcgtgcc tctgcagcac
      301 tgcaagatcc ccgagctgcc agtccaggcc agcattctgt ttgagctcca gctcttcttc
      361 tgtcagctca tagccctgtt cgtgcactac atcaacatct ataagacagt ctggtggtat
      421 ccaccctcac acccaccctc ccacacctcc ctgaacttcc acctgatcga cttcaacctg
      481 ctgatggtga ccaccattgt tctgggccgt cgcttcattg ggtccatcgt gaaggaggct
      541 tcgcagaggg ggaaggtctc cctcttccgg tccatcctgc tgttcctcac ccgcttcacc
      601 gttctcacgg ccacaggctg gagtctgtgc cggtccctca tccacctctt caggacctac
      661 tccttcctga acctcctgtt cctctgctat ccgtttggga tgtacattcc gttcctgcag
      721 ctgaactatg atcttcgcaa gacgaacctc ttcagccacg tggcttccat gggaccccga
      781 gaggcagtca gcggcctggc aaggagtcgg gactacttcc tgaccctgcg ggagacttgg
      841 aagcagcaca cacgacagct ctatggccca gaggccatgc ccacccacgc ctgctgcttg
      901 tcacccagcc tcattcgcaa tgaagtggag ttcctcaaaa tggacttcaa ctggcgcatg
      961 aaggaagtcc ttgtcagctc catgctgagt gcctattatg tggcctttgt acctgtttgg
     1021 tttgtgaaga atacacatta ttatgacaag cgctggtcct gtgagctctt cctgctggtg
     1081 tccatcagta cctcggtgat cctcatgcag cacctacttc ctgccagcta ctgtgacctg
     1141 ctgcacaagg ccgctgctca cctgggctgc tggcagaagg tggacccagc tctgtgctcc
     1201 aatgtgctgc aacacccgtg gacggaagag tgcatgtggc cacagggtgt gctggtgaag
     1261 cacagcaaga atgtctacaa agcgctgggc cactacaacg tggccatccc ctctgacgtc
     1321 tcccacttcc gcttccactt ctttttcagc aaccctctga ggatcctcaa catccttttg
     1381 ctgctagagg gcgctgtcat tgtctaccag ctatactcct taatgtcctc cgagaagtgg
     1441 caccagacca tctccctggc cctcattctc ttcagcaact actatgcctt cttcaagctg
     1501 ctccgggacc gcctggtatt gggcaaagcc tactcttact cagccagccc ccagagggac
     1561 ctggaccacc ggttctcctg agtcccagga tgatcctcca gaggagacaa catccgggca
     1621 tcacccaggg gcttcctggc caagggctct tgggattggg gggaggggtg caaaaaacaa
     1681 aacaaaaaac aaacaaaaaa attaacccac cagagctttg tatttttgtt acgtactgtt
     1741 tctttctttg ataattgatg tgataagaaa aatgtcttat ttttatactc tgaaaaaaaa
     1801 aaaaaaaaaa aaaaaaaa
//
