LOCUS       NM_001013865            2079 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus transmembrane protein 39a (Tmem39a), mRNA.
ACCESSION   NM_001013865 XM_213608
VERSION     NM_001013865.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2079)
  AUTHORS   Miao,G., Zhang,Y., Chen,D. and Zhang,H.
  TITLE     The ER-Localized Transmembrane Protein TMEM39A/SUSR2 Regulates
            Autophagy by Controlling the Trafficking of the PtdIns(4)P
            Phosphatase SAC1
  JOURNAL   Mol Cell 77 (3), 618-632 (2020)
   PUBMED   31806350
REFERENCE   2  (bases 1 to 2079)
  AUTHORS   Li,X., Ma,R., Li,Q., Li,S., Zhang,H., Xie,J., Bai,J., Idris,A. and
            Feng,R.
  TITLE     Transmembrane Protein 39A Promotes the Replication of
            Encephalomyocarditis Virus via Autophagy Pathway
  JOURNAL   Front Microbiol 10, 2680 (2019)
   PUBMED   31849860
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC085845.1.
            
            On Apr 20, 2005 this sequence version replaced XM_213608.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC085845.1, SRR8487230.61118.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2079
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /map="11q21"
     gene            1..2079
                     /gene="Tmem39a"
                     /gene_synonym="RGD1306421"
                     /note="transmembrane protein 39a"
                     /db_xref="GeneID:288092"
                     /db_xref="RGD:1306421"
     exon            1..273
                     /gene="Tmem39a"
                     /gene_synonym="RGD1306421"
                     /inference="alignment:Splign:2.1.0"
     exon            274..465
                     /gene="Tmem39a"
                     /gene_synonym="RGD1306421"
                     /inference="alignment:Splign:2.1.0"
     CDS             353..1846
                     /gene="Tmem39a"
                     /gene_synonym="RGD1306421"
                     /codon_start=1
                     /product="transmembrane protein 39A"
                     /protein_id="NP_001013887.1"
                     /db_xref="GeneID:288092"
                     /db_xref="RGD:1306421"
                     /translation="MPSRRRGPSRQQLSRSALPSIQTLVGGGCGNGTGLRNRNGSAIG
                     LPVPPTTALITPGPVRHCQIPDLPVDGSLFFEFLFFIYLLIVLFIQYINIYKTVWWYP
                     YNHPASCTSLNFHLIDYYLAAFITVMLARRLVWALISEATKAGAASMVHYTALILARL
                     VLLTLCGWVLCWTLVNLFRSHSVLNLLFLGYPFGVYVPLYCFHQDSRAHLLLTDYVVQ
                     HQAVEDAASNVGSLTRSKDFLSLLLESLKEQFNNSTPIPTHSCPLSPDLIRNEVECLK
                     ADFNHRIKDVLFNSLFSAYYVAFLPLCFVKSTQYYDMRWSCEHLIMVWINAFVMLTTQ
                     LLPSKYCDLLHKSAAHLGKWQKLEHGFYSNAPQHIWSENTIWPQGVLVRHSRCLYRAM
                     GPYNVAVPSDGSHARFYFLFHRPLRVLNLLILIEGSVIIYQLYSLLRSEKWNHTLSMA
                     LVLFCNYYVLFKLLRDRIVLGRAYSYPSTATDSRQTKLPLSSEGELR"
     exon            466..688
                     /gene="Tmem39a"
                     /gene_synonym="RGD1306421"
                     /inference="alignment:Splign:2.1.0"
     exon            689..772
                     /gene="Tmem39a"
                     /gene_synonym="RGD1306421"
                     /inference="alignment:Splign:2.1.0"
     exon            773..927
                     /gene="Tmem39a"
                     /gene_synonym="RGD1306421"
                     /inference="alignment:Splign:2.1.0"
     exon            928..1270
                     /gene="Tmem39a"
                     /gene_synonym="RGD1306421"
                     /inference="alignment:Splign:2.1.0"
     exon            1271..1458
                     /gene="Tmem39a"
                     /gene_synonym="RGD1306421"
                     /inference="alignment:Splign:2.1.0"
     exon            1459..1579
                     /gene="Tmem39a"
                     /gene_synonym="RGD1306421"
                     /inference="alignment:Splign:2.1.0"
     exon            1580..2050
                     /gene="Tmem39a"
                     /gene_synonym="RGD1306421"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctgggcgatg gaagctgagg atgatgaggc ttggtgatgg ggtcaggctc tgcttctgac
       61 ttcaggtctg gctctggcac ggactcccgg tcggggtctg gtaacgtaga gacccgacac
      121 gtttcttcga ctgtcctgtg ggatcctgcc tgcgtccggg cagctgtttt ggagcgcttc
      181 aaagaaggga gtgagttcgg gtgcccggtg tcgggtctgt gaagccgcct cctcctccca
      241 gggatctctc tccgtggcca gcctgttcca tgcagttgaa ataagttgac ctgaaataag
      301 ttagcctggg ttgcaacttc gggtggcact ggaaactacc tggttcctgg acatgcccag
      361 tagaaggagg ggtcctagtc ggcagcaact cagccggtca gctttacctt ctattcagac
      421 tttggttggt ggcggctgtg gcaatggaac aggcttgagg aacaggaatg gtagtgctat
      481 tggccttcca gtcccaccca ccacagcctt aattacccca ggtcctgttc gtcattgcca
      541 aatccccgac ttaccagtag atgggagcct gttctttgaa tttcttttct tcatctacct
      601 gctgattgtt ctgttcattc agtatatcaa catctataag accgtgtggt ggtatccata
      661 caatcatcct gcatcttgta cttcactgaa ttttcatctc attgattatt acctggcagc
      721 attcatcaca gtgatgcttg cgaggaggct cgtatgggcc ctcatttccg aggctactaa
      781 agcaggtgca gcatctatgg ttcactacac agctctgata ctggcccgct tggtgctcct
      841 tactctgtgt ggatgggtgc tttgttggac cttggtcaat ctcttccgaa gccattcagt
      901 cctcaatctc ctcttccttg gctatccgtt tggtgtttat gtacctctct actgtttcca
      961 tcaagatagc agagcccatc ttcttctcac agactatgtg gttcagcacc aggcagtaga
     1021 ggacgcagcc tcaaatgtgg gcagtttgac cagatccaaa gatttcctgt ccttactgct
     1081 ggagtctcta aaagagcagt ttaataacag cacgcccatc cccacccaca gctgccccct
     1141 gtctcctgac ctcattcgca atgaggtgga atgtctgaag gcagatttca accacagaat
     1201 caaggacgtt ctcttcaatt ccctcttcag cgcctactac gtagcatttc tcccgctgtg
     1261 ttttgtgaag agtacccagt attacgacat gcgctggtca tgtgagcacc tcattatggt
     1321 gtggatcaat gcttttgtca tgctcaccac gcagctgcta ccatccaaat actgtgactt
     1381 gctacacaaa tcagcggctc acctgggcaa gtggcagaag ttggaacatg ggttctacag
     1441 caatgctccc cagcacattt ggtcagagaa cacaatatgg cctcaagggg tgttggtgcg
     1501 gcacagcaga tgtttatata gagccatggg accttacaac gtagcagtgc cttctgatgg
     1561 atcccatgcc cgcttttatt tcctgttcca tcgcccgtta cgagtgttga acctgcttat
     1621 cctcatcgag ggcagtgtca tcatctacca gctgtactcg ctgctgcgct cggagaagtg
     1681 gaaccacacg ctctccatgg cactcgttct tttctgcaac tactatgttt tatttaagct
     1741 cctgcgggac agaatagtcc taggcagggc atactcctac ccctcaacag ctacggactc
     1801 aaggcagacc aagctgcctc tcagcagtga gggagaactc agataaagat attttcatac
     1861 gatctatttt ttcttgcgat ttttataaat atttaagata ttttatattt tgtatactat
     1921 tgttttgaaa gttgggaagg gtaagggata ttaaatgtat ccataaacaa gacgatgtta
     1981 tctttcatgt gttagtatat ttgaatatta tacatgagag gctgcccctt cagtaaaaga
     2041 ttgacttgtt aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
//
