LOCUS       NM_001271137            1032 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus transmembrane protein 35B (Tmem35b), mRNA.
ACCESSION   NM_001271137 XM_002729531
VERSION     NM_001271137.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1032)
  AUTHORS   Gibbs,R.A., Weinstock,G.M., Metzker,M.L., Muzny,D.M.,
            Sodergren,E.J., Scherer,S., Scott,G., Steffen,D., Worley,K.C.,
            Burch,P.E., Okwuonu,G., Hines,S., Lewis,L., DeRamo,C., Delgado,O.,
            Dugan-Rocha,S., Miner,G., Morgan,M., Hawes,A., Gill,R., Celera,
            Holt,R.A., Adams,M.D., Amanatides,P.G., Baden-Tillson,H.,
            Barnstead,M., Chin,S., Evans,C.A., Ferriera,S., Fosler,C.,
            Glodek,A., Gu,Z., Jennings,D., Kraft,C.L., Nguyen,T.,
            Pfannkoch,C.M., Sitter,C., Sutton,G.G., Venter,J.C., Woodage,T.,
            Smith,D., Lee,H.M., Gustafson,E., Cahill,P., Kana,A.,
            Doucette-Stamm,L., Weinstock,K., Fechtel,K., Weiss,R.B., Dunn,D.M.,
            Green,E.D., Blakesley,R.W., Bouffard,G.G., De Jong,P.J.,
            Osoegawa,K., Zhu,B., Marra,M., Schein,J., Bosdet,I., Fjell,C.,
            Jones,S., Krzywinski,M., Mathewson,C., Siddiqui,A., Wye,N.,
            McPherson,J., Zhao,S., Fraser,C.M., Shetty,J., Shatsman,S.,
            Geer,K., Chen,Y., Abramzon,S., Nierman,W.C., Havlak,P.H., Chen,R.,
            Durbin,K.J., Simons,R., Ren,Y., Song,X.Z., Li,B., Liu,Y., Qin,X.,
            Cawley,S., Worley,K.C., Cooney,A.J., D'Souza,L.M., Martin,K.,
            Wu,J.Q., Gonzalez-Garay,M.L., Jackson,A.R., Kalafus,K.J.,
            McLeod,M.P., Milosavljevic,A., Virk,D., Volkov,A., Wheeler,D.A.,
            Zhang,Z., Bailey,J.A., Eichler,E.E., Tuzun,E., Birney,E.,
            Mongin,E., Ureta-Vidal,A., Woodwark,C., Zdobnov,E., Bork,P.,
            Suyama,M., Torrents,D., Alexandersson,M., Trask,B.J., Young,J.M.,
            Huang,H., Wang,H., Xing,H., Daniels,S., Gietzen,D., Schmidt,J.,
            Stevens,K., Vitt,U., Wingrove,J., Camara,F., Mar Alba,M.,
            Abril,J.F., Guigo,R., Smit,A., Dubchak,I., Rubin,E.M., Couronne,O.,
            Poliakov,A., Hubner,N., Ganten,D., Goesele,C., Hummel,O.,
            Kreitler,T., Lee,Y.A., Monti,J., Schulz,H., Zimdahl,H.,
            Himmelbauer,H., Lehrach,H., Jacob,H.J., Bromberg,S.,
            Gullings-Handley,J., Jensen-Seaman,M.I., Kwitek,A.E., Lazar,J.,
            Pasko,D., Tonellato,P.J., Twigger,S., Ponting,C.P., Duarte,J.M.,
            Rice,S., Goodstadt,L., Beatson,S.A., Emes,R.D., Winter,E.E.,
            Webber,C., Brandt,P., Nyakatura,G., Adetobi,M., Chiaromonte,F.,
            Elnitski,L., Eswara,P., Hardison,R.C., Hou,M., Kolbe,D., Makova,K.,
            Miller,W., Nekrutenko,A., Riemer,C., Schwartz,S., Taylor,J.,
            Yang,S., Zhang,Y., Lindpaintner,K., Andrews,T.D., Caccamo,M.,
            Clamp,M., Clarke,L., Curwen,V., Durbin,R., Eyras,E., Searle,S.M.,
            Cooper,G.M., Batzoglou,S., Brudno,M., Sidow,A., Stone,E.A.,
            Venter,J.C., Payseur,B.A., Bourque,G., Lopez-Otin,C., Puente,X.S.,
            Chakrabarti,K., Chatterji,S., Dewey,C., Pachter,L., Bray,N.,
            Yap,V.B., Caspi,A., Tesler,G., Pevzner,P.A., Haussler,D.,
            Roskin,K.M., Baertsch,R., Clawson,H., Furey,T.S., Hinrichs,A.S.,
            Karolchik,D., Kent,W.J., Rosenbloom,K.R., Trumbower,H.,
            Weirauch,M., Cooper,D.N., Stenson,P.D., Ma,B., Brent,M.,
            Arumugam,M., Shteynberg,D., Copley,R.R., Taylor,M.S., Riethman,H.,
            Mudunuri,U., Peterson,J., Guyer,M., Felsenfeld,A., Old,S.,
            Mockrin,S. and Collins,F.
  CONSRTM   Rat Genome Sequencing Project Consortium
  TITLE     Genome sequence of the Brown Norway rat yields insights into
            mammalian evolution
  JOURNAL   Nature 428 (6982), 493-521 (2004)
   PUBMED   15057822
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Sep 1, 2012 this sequence version replaced XM_002729531.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643294.22612.1,
                                           SRR26360176.1040636.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-105               JAXUCZ010000005.1  144730763-144730867
            106-286             JAXUCZ010000005.1  144732632-144732812
            287-1032            JAXUCZ010000005.1  144733648-144734393
FEATURES             Location/Qualifiers
     source          1..1032
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..1032
                     /gene="Tmem35b"
                     /gene_synonym="Zmym6nb"
                     /note="transmembrane protein 35B"
                     /db_xref="GeneID:100361631"
                     /db_xref="RGD:2319741"
     CDS             1..459
                     /gene="Tmem35b"
                     /gene_synonym="Zmym6nb"
                     /note="ZMYM6 neighbor protein"
                     /codon_start=1
                     /product="transmembrane protein 35B precursor"
                     /protein_id="NP_001258066.1"
                     /db_xref="GeneID:100361631"
                     /db_xref="RGD:2319741"
                     /translation="MLVSLGALRVLLGIFFTLTGAAKLFQVSAPVSQQMKALFEQFAE
                     VFPLKVLGYQPDPISYQAAVGWLELLAGLLLVVGPPVLQQISNVLLILLMMGAVFTLV
                     VLEESLSTYIPAVVCLGLLLLLDSCQFLVRTKGAVRCRNKIPGALGNPRK"
     exon            1..105
                     /gene="Tmem35b"
                     /gene_synonym="Zmym6nb"
                     /inference="alignment:Splign:2.1.0"
     exon            106..286
                     /gene="Tmem35b"
                     /gene_synonym="Zmym6nb"
                     /inference="alignment:Splign:2.1.0"
     exon            287..1032
                     /gene="Tmem35b"
                     /gene_synonym="Zmym6nb"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgctggtca gtctaggcgc attgcgagtt ctgcttggca tctttttcac tctcaccggg
       61 gctgccaagc tctttcaggt ctcggccccc gtgtcacaac aaatgaaagc cttgttcgag
      121 cagtttgctg aggtgttccc gttgaaggtg ttgggctacc agccagatcc tataagctac
      181 caagcagctg tgggctggct ggaactgctg gctgggttgc tgctggtcgt gggtccacct
      241 gtgctacagc agatcagtaa cgtgctcttg atcctcctca tgatgggggc tgtcttcact
      301 ttggtggtcc tggaagagtc actgagtact tatatcccag ctgttgtctg tctggggctc
      361 ctgctgctgc tggattcctg ccagttctta gttcgaacta aaggagcggt cagatgccgt
      421 aacaaaatcc ctggtgcact tgggaaccct aggaagtgag tcttcatgcc acacagcaca
      481 gcagggacag tcatagcata ctgtctacaa ctttgttagt cattcagtgt aaagagagag
      541 cttgtctagg cctcagtctc ccctaataac tatgttgctc tgttctgagg ggggcagtaa
      601 cactcttcaa gtcacgtgaa aacaggaagt aaacaggaaa taaactaaaa ccactccaga
      661 ttctaatact ctgtgaataa tcatctcaat gttttggcgt gactgtgcct cacaactttt
      721 tctataatta tatacagatg catggttttt tttttaatga aatgagacag tgtagcctat
      781 tgcccaccgt taagatccag ggttctttaa catctcttgt gtttttattc cgtcaatgtt
      841 catggcttta agcactcaag tcactgagtt ggggatgaag aggcagctga ggtgctagga
      901 acacttactg cctttgcaaa gggccagggt tcagttccca gcatcctcat ggtgactcac
      961 aactctacct ctggtctcag agaaagcaaa acactcatgt acataaaata aatgttttta
     1021 aaggatgagt ta
//
