LOCUS       NM_001170475            5121 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus transmembrane protein 260 (Tmem260), mRNA.
ACCESSION   NM_001170475 XM_001073762 XM_341306
VERSION     NM_001170475.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5121)
  AUTHORS   Wang,C., Zhao,Y., Ming,Y., Zhao,S. and Guo,Z.
  TITLE     A polymorphism at the microRNA binding site in the 3'-untranslated
            region of C14orf101 is associated with the risk of gastric cancer
            development
  JOURNAL   Exp Ther Med 12 (3), 1867-1872 (2016)
   PUBMED   27602096
REFERENCE   2  (bases 1 to 5121)
  AUTHORS   Yang,B., Liu,C., Diao,L., Wang,C. and Guo,Z.
  TITLE     A polymorphism at the microRNA binding site in the 3' untranslated
            region of C14orf101 is associated with non-Hodgkin lymphoma overall
            survival
  JOURNAL   Cancer Genet 207 (4), 141-146 (2014)
   PUBMED   24831772
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000015.1.
            
            On Nov 30, 2020 this sequence version replaced NM_001170475.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582424.2016100.1,
                                           SRR26643429.48226.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-210               JAXUCZ010000015.1  24213846-24214055
            211-242             JAXUCZ010000015.1  24218344-24218375
            243-394             JAXUCZ010000015.1  24219065-24219216
            395-572             JAXUCZ010000015.1  24240070-24240247
            573-686             JAXUCZ010000015.1  24241877-24241990
            687-866             JAXUCZ010000015.1  24245198-24245377
            867-907             JAXUCZ010000015.1  24248359-24248399
            908-991             JAXUCZ010000015.1  24251284-24251367
            992-1106            JAXUCZ010000015.1  24252808-24252922
            1107-1276           JAXUCZ010000015.1  24254546-24254715
            1277-1448           JAXUCZ010000015.1  24263801-24263972
            1449-1597           JAXUCZ010000015.1  24267525-24267673
            1598-1774           JAXUCZ010000015.1  24270484-24270660
            1775-1828           JAXUCZ010000015.1  24272949-24273002
            1829-1919           JAXUCZ010000015.1  24275790-24275880
            1920-5121           JAXUCZ010000015.1  24278663-24281864
FEATURES             Location/Qualifiers
     source          1..5121
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /map="15p14"
     gene            1..5121
                     /gene="Tmem260"
                     /gene_synonym="RGD1562018"
                     /note="transmembrane protein 260"
                     /db_xref="GeneID:361030"
                     /db_xref="RGD:1562018"
     exon            1..210
                     /gene="Tmem260"
                     /gene_synonym="RGD1562018"
                     /inference="alignment:Splign:2.1.0"
     CDS             63..2174
                     /gene="Tmem260"
                     /gene_synonym="RGD1562018"
                     /EC_number="2.4.1.109"
                     /codon_start=1
                     /product="protein O-mannosyl-transferase TMEM260"
                     /protein_id="NP_001163946.2"
                     /db_xref="GeneID:361030"
                     /db_xref="RGD:1562018"
                     /translation="MGLHGDGGGPAAGAGPWRSGGLCGSVAVFAAVAAVFTLTLPRSL
                     PGGDSGELITAAHELGVAHPPGYPLFTLVANLAITLFPFGSVAYRVNLLCGLFGAVAA
                     SLLFFTVFRLSGSRAGGILAAGVFSFSRLTWQWSIAAEVFSLNNLFVGLLMALTVRFE
                     EATAAKERSKIAAIGAFSCGLSLCNQHTIVLYVLCIIPWILFRLLKEKELTLSLLLKL
                     ALAFSAGLLPYVYLPVSSYLSHARWTWGDQTTLRGFLTHFLREEYGTFSLAKSEVGSS
                     ASTVLLSQIINMKTELSFNIQALAVWANVCLPRKDRRKSSVVWLFTGMLCVYSLFFTW
                     RANLDISKPLFMGVVERFWMQSNAVVAVLAGLGLATLVSETSRVLSWNGVRNLEWLSA
                     ALFIAYQVYSNYSICDQRTNNVIDQFARNLLNSMPPDAIILLRGDLPGNALRYLHYCE
                     GLRPDVSLVDQEMMTYEWYLPKVARHLPGVHFPGDRWNPVEGVLPSGMVTFNLYHFLE
                     MNKQKETFVCIGIHEGDPTWKKDYSLWPWGSCDKLVPSKIVFNPEEWIEHTRTIYNWT
                     EEYGRFDPSSWESVANEEMWQARMKTPFFIFSLAESAAVPADVKAQLYTHAYKLYKEI
                     VYLQEEHPVNWHKNYAIACERMLRLPGTGEDPEVLLSETIRHFHLYTQKAQNDPQRAS
                     IMAALKHLRRELRSLRNTKEV"
     exon            211..242
                     /gene="Tmem260"
                     /gene_synonym="RGD1562018"
                     /inference="alignment:Splign:2.1.0"
     exon            243..394
                     /gene="Tmem260"
                     /gene_synonym="RGD1562018"
                     /inference="alignment:Splign:2.1.0"
     exon            395..572
                     /gene="Tmem260"
                     /gene_synonym="RGD1562018"
                     /inference="alignment:Splign:2.1.0"
     exon            573..686
                     /gene="Tmem260"
                     /gene_synonym="RGD1562018"
                     /inference="alignment:Splign:2.1.0"
     exon            687..866
                     /gene="Tmem260"
                     /gene_synonym="RGD1562018"
                     /inference="alignment:Splign:2.1.0"
     exon            867..907
                     /gene="Tmem260"
                     /gene_synonym="RGD1562018"
                     /inference="alignment:Splign:2.1.0"
     exon            908..991
                     /gene="Tmem260"
                     /gene_synonym="RGD1562018"
                     /inference="alignment:Splign:2.1.0"
     exon            992..1106
                     /gene="Tmem260"
                     /gene_synonym="RGD1562018"
                     /inference="alignment:Splign:2.1.0"
     exon            1107..1276
                     /gene="Tmem260"
                     /gene_synonym="RGD1562018"
                     /inference="alignment:Splign:2.1.0"
     exon            1277..1448
                     /gene="Tmem260"
                     /gene_synonym="RGD1562018"
                     /inference="alignment:Splign:2.1.0"
     exon            1449..1597
                     /gene="Tmem260"
                     /gene_synonym="RGD1562018"
                     /inference="alignment:Splign:2.1.0"
     exon            1598..1774
                     /gene="Tmem260"
                     /gene_synonym="RGD1562018"
                     /inference="alignment:Splign:2.1.0"
     exon            1775..1828
                     /gene="Tmem260"
                     /gene_synonym="RGD1562018"
                     /inference="alignment:Splign:2.1.0"
     exon            1829..1919
                     /gene="Tmem260"
                     /gene_synonym="RGD1562018"
                     /inference="alignment:Splign:2.1.0"
     exon            1920..5121
                     /gene="Tmem260"
                     /gene_synonym="RGD1562018"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggccggggaa ggtccgcgcc gcggcgaggg tcgcggtccg cgagctgcgc gcgtccgggc
       61 ccatgggtct ccatggcgac ggcgggggcc cggcagccgg agcggggccg tggcgctccg
      121 ggggcctctg cggcagcgtg gccgtgttcg ccgccgtggc tgccgtgttc accctcacgc
      181 tgccccgctc gctgccgggg ggagactcgg gggaactgat cacagccgca catgagcttg
      241 gagtcgccca tccccccggc tatccgctct tcacactggt ggctaacctg gcaatcaccc
      301 tctttccttt tggctccgtc gcctaccgcg tcaatctcct ctgtggctta ttcggggcgg
      361 tagcggcttc gctcctcttc ttcaccgttt tcaggctttc tggctcacgt gccggaggaa
      421 tccttgctgc gggggtgttt tcgttttctc gcctaacatg gcagtggtcc attgcagccg
      481 aggtttttag cttaaacaat ctgtttgtgg ggctgctcat ggcgcttacc gtgcgttttg
      541 aggaggcaac agccgcaaag gagagatcaa agatagcagc cattggagct ttctcatgtg
      601 gcctcagctt gtgtaatcag cacacaatag tcctctatgt tttatgcata ataccctgga
      661 ttcttttccg actcctgaaa gagaaggaac tcacccttag cctgctgctg aagctggccc
      721 tggccttctc tgctggcctg ctgccctacg tctacctgcc agtctcatcc tacctcagtc
      781 atgcccgctg gacctgggga gaccagacga cactgcgagg gtttctaaca cattttctca
      841 gggaagaata tggaacattc agcctggcca agtctgaagt aggatcaagc gcgtctacag
      901 tgctgctttc acagataata aatatgaaga ccgaactttc attcaatatc caagctcttg
      961 ccgtttgggc aaatgtatgt ttacctagaa aggacagacg gaagtcgtca gtagtatggc
     1021 ttttcactgg gatgctttgc gtgtactcgt tattcttcac ttggcgagca aatttagata
     1081 tttcaaaacc acttttcatg ggggtggtgg agcgattctg gatgcagagc aatgcggtgg
     1141 tggccgttct cgctggcctt ggtttggcca cgcttgtgtc tgagacgagc cgagtgctca
     1201 gctggaatgg ggttcggaac ctggagtggc tgtcagcggc cctcttcatt gcttatcaag
     1261 tgtactcaaa ctacagcatt tgtgaccaaa gaaccaataa tgtgattgat cagtttgcac
     1321 gaaatcttct gaactccatg cctcccgatg ctatcatcct actgagagga gaccttccgg
     1381 ggaacgcgct ccgttacttg cattactgcg aggggttgag gccagatgtt tccctggtgg
     1441 accaagaaat gatgacctat gagtggtact tacccaaggt ggcaaggcat ttgccaggag
     1501 tgcactttcc tggggaccgg tggaaccctg tggaaggagt gttaccgagt ggaatggtca
     1561 cattcaatct ttatcacttt cttgaaatga ataaacaaaa agaaacattt gtttgcatag
     1621 ggatccatga aggtgaccca acctggaaaa aggactattc actttggccg tggggatctt
     1681 gtgacaagtt agtgccctca aagattgtat tcaacccaga ggagtggatt gagcatacaa
     1741 gaaccatcta caattggact gaggaatacg gaagatttga tccatcttct tgggaatccg
     1801 tggccaacga ggagatgtgg caagcaagga tgaagactcc atttttcatc ttcagcctgg
     1861 cagagtctgc cgcagttcct gcagacgtga aagcacaact gtacactcac gcatataaac
     1921 tttataagga gatcgtgtac ttgcaagagg aacacccagt gaattggcac aagaactacg
     1981 ccatcgcctg tgagcggatg ctgcgccttc cagggaccgg cgaggaccct gaagtcctgc
     2041 tgtctgaaac catcagacat tttcacctct atactcagaa agcacagaat gacccccagc
     2101 gagcaagcat catggctgct ctcaagcatc taagacgaga actgcgaagt ctgagaaata
     2161 ctaaagaggt ctgagccagc cagggggtag ctctgcttac cgctccactt ccaaagtttc
     2221 tagtccaaga gttttcccct caagtaaaga agcagcacca cagaagggga gacctcagca
     2281 tctcctgggt aaagctatca agtgcagcag aaagaaagta atggctgaaa tgtaggcctt
     2341 atgcaaaatc ctctttatct cacgttgcca aattagcatg tccatgggaa gcgttcataa
     2401 gcatctgcag tcctcacaga gcgactgacc ataggttcta gatgagaagg aactgtctcc
     2461 acagacctaa accgttggcc acccttactg ggatccaaag gtaaactctc aagaaatact
     2521 cattgcagac caaagccatt ttctatttcc tgaaagtaag atcgtttcta aaaaacgatt
     2581 cttgctatat acctcattac catttctttt ctctttgtta actataatta tcttagtctt
     2641 aaactttata ctacatacca agtatctgac ttgtcttaaa cttttgagtt tgaccatctt
     2701 agttctgtgg ccccgaaaag gaaaactggt ttcacattca ctctttctgt tgcagaaatg
     2761 ggcaaagtaa agaggcattt tatacatcct taattaattt catatttatg tcgtcctcct
     2821 ctttggattc acagatctag accagtaatt agtaagtggc tgccctgatg aacaaagggg
     2881 cgtgggccag agcgggagtg aggaagttgt tctctaaatc catttctgtt tcaaacatct
     2941 tttatacata ttactaaaga gaacagagca agaaatgcaa ataataatag ttctttattt
     3001 tattatgaca gttaattaat agcaacctgt tttaatgaat aaagtcactc agagtccttc
     3061 agcacttcct aagtagaggc ccgagtctgt agggattctt cccctgattg tatagctcct
     3121 agactccgag cactatctag gcccctgtat agaaatgctc actaatgaag agggagggct
     3181 agaagcttgt ctgcattcaa agatcactgg tgagtcattc agcaagaaaa ggccccttac
     3241 caggcatagt cacagttccg tagcattgta ctagcaaaag ggtctgatca aaggtccccc
     3301 gtggagcttg catggctccc tttcatacca cgaccataat taaaaccact aattctcttt
     3361 taaaatgctg caggatgcca tgtaggcatc tgtctggagt gtcctttgtg atgtcataag
     3421 ctgttaagga ccagtgccga gggcttttga gtgaaatgcc agtcatgaag gtgcttcaag
     3481 acaagggtac ctctaaaagc ttgacagggc cttgactgca caattcgagc tgaatttgcc
     3541 ccttgtcagc tgccagtaaa taaatctcaa aggggggagc tgcagtttca ttacctgatc
     3601 cgtggggctt tgttggtctt ggcatcacac aggggaagct cttgctcctc ctttctgtgg
     3661 atttgaagat gtccattgga gcctgcagtg cctggacagg gttcagagcg gagccttttg
     3721 aagagtgtca atagttgtaa cagttcagct gttaggaaga caaatacgtg gaggagctca
     3781 ttaatccgct ttggctctcg gtgccttttg cccttttatc acagccttat taggctcctg
     3841 ctcatcttga accagaaaaa accgaattga agttgttgag tactaattgg caaagacttt
     3901 taatcatggg ccaagaactt tcactgactt gaaagtaact tctccacagg gacgagccag
     3961 aaacctggtt caccttaaaa caaaaacctg ttggagctca gtgtgctgtg agaatcggag
     4021 gaagcgtcgg taaactgtcc aaggctatcg actcaaagaa attatggaag attatgactt
     4081 tagcttttct aggggacaag gacaataaaa tccaaacgtt tcttcagaaa gccttcattg
     4141 gttcagaaaa atcacttgag tatgtgtggc aaccatgttt gtttctgaac atccttcata
     4201 tgtgtggctg ttcctctgag gatctacata tgcacccggg attgatcaaa aggagcgttt
     4261 tccatctggc ctcacgagtg gcaacctgag aacacctttc aaatgtgtgc cggcgtgtag
     4321 gcgtgtccgc tgagtgtgct ttgcacatga gtgttagcgc ttggcacagg ttgatattgg
     4381 cacagcactg actttagacg gcttggacaa agcaataata taaatagtgt gagacgaaat
     4441 caccacaact atgtaaattc cttaaaacca actggaaacg aaaaaccttc gaatggaact
     4501 agcatttaag gacggttagc cttgctagcc tgcattccca gtcagctatg gaagaacttt
     4561 tttcctttct cctgtgtgaa gctaaagttg cttttccttg tgttctcgct tttccttggc
     4621 tggagcataa cagcataaaa tcagataaag ggctcccctc agtccagccc ccggctgagg
     4681 agggcgtgag gagatggttt cttgtatagg atttggccag catcctcctc cgtgtccccg
     4741 gagtgccagg ggttggcaga tctacaggaa ccccacaaag ccaacttctg cctgcaggtt
     4801 agcctgagga gccagcagag ctgtctgtct ctccacacca cagtgcctgc tgcctggacc
     4861 ctggggctag cccacaccag agggcacagg acactgtggc tgtcatattc actagcaaag
     4921 ctcctacaca tcctacctgc cacccttctc tgcttcctgc cgtgtgaatt cgagagcatg
     4981 cgcagttcct agagcctgtt ccctcttgtt tttttaaaag aaccattaaa aaaaaaatac
     5041 gtgtttcgtt ctgttactcc aattgtagcc aaaagaaaag aaaattaatt ataatgtatt
     5101 aaaaaatttg aaagcttgca a
//
