LOCUS       NM_001277885             758 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus transmembrane protein 247 (Tmem247), mRNA.
ACCESSION   NM_001277885 XM_001059330 XM_003750102
VERSION     NM_001277885.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 758)
  AUTHORS   Choi,E., Lee,J., Oh,J., Park,I., Han,C., Yi,C., Kim,D.H., Cho,B.N.,
            Eddy,E.M. and Cho,C.
  TITLE     Integrative characterization of germ cell-specific genes from mouse
            spermatocyte UniGene library
  JOURNAL   BMC Genomics 8, 256 (2007)
   PUBMED   17662146
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1 and BF393809.1.
            
            On or before Apr 27, 2013 this sequence version replaced
            XM_001059330.3, XM_003750102.1.
            
            Sequence Note: This RefSeq record was created from transcript data
            from different strains because no single transcript from the same
            strain was available for the full length of the gene. Note, the
            stop codon annotated on this record is not found in the rat
            reference genome (Build 5.1, Annotation Release 103). Instead, the
            first two nucleotides of the stop codon are encoded by the genome,
            and the third nucleotide is provided by the polyA tail. This
            unusual biology is supported by transcript alignments and
            orthologous data.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760383
                              [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            polyA required for stop codon    :: translation inferred
            RefSeq Select criteria           :: based on single protein-coding
                                                transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-233               JAXUCZ010000006.1  13454230-13454462   c
            234-560             JAXUCZ010000006.1  13453308-13453634   c
            561-758             BF393809.1         1-198               c
FEATURES             Location/Qualifiers
     source          1..758
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q12"
     gene            1..758
                     /gene="Tmem247"
                     /note="transmembrane protein 247"
                     /db_xref="GeneID:682006"
                     /db_xref="RGD:1588160"
     exon            1..233
                     /gene="Tmem247"
                     /inference="alignment:Splign:2.1.0"
     CDS             117..743
                     /gene="Tmem247"
                     /codon_start=1
                     /product="transmembrane protein 247"
                     /protein_id="NP_001264814.1"
                     /db_xref="GeneID:682006"
                     /db_xref="RGD:1588160"
                     /translation="MDREDREVMEARGAGESCPTLSKVAPADSMPEGKLKASLDAEPP
                     KLELPTLEENGISEDRDCPGPPKSLSPKSGPTTKGQAGDGPSLEPTELPLPLETEHHN
                     AMELEKVRMEFELTRLKYLHQENERQRQHEEVMEQLQQQQQALPRQFSGGLQDLLLPQ
                     NQFAMFLYCFIFIHIIYVAKEMVFFLFSKHYLFCLAAILLCLIKTLWS"
     exon            234..560
                     /gene="Tmem247"
                     /inference="alignment:Splign:2.1.0"
     exon            561..742
                     /gene="Tmem247"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggaatgtggc gattgtgagg aaggggattg tgatggcagt cagaacctgg tgaagccaaa
       61 tgttattgtc tcaaagatgt cctctggccc aggttggcag cactgtggtt acctggatgg
      121 acagggagga cagggaggtg atggaagccc gaggggcagg agaaagctgc cccaccctct
      181 ccaaggtggc acctgctgac agcatgcctg aggggaagct gaaggcttct ttggatgcag
      241 aaccccccaa actagaactg cctaccctgg aagagaatgg aatctctgag gacagagatt
      301 gcccagggcc ccctaagtca ctgtctccga agtctggccc taccaccaag ggtcaggctg
      361 gcgatggacc tagtctggaa cccaccgagc tgcccctgcc cctggagaca gaacaccaca
      421 acgcgatgga gctggagaag gtgcgcatgg agtttgaact gacgcgcctc aagtacctgc
      481 accaggagaa cgagcggcag cggcagcacg aggaggtgat ggagcagcta cagcagcagc
      541 agcaggcttt gcctcgccag ttctcaggag gcctccagga cctcttgctc ccccagaacc
      601 aattcgccat gttcctctac tgcttcatct tcattcacat catctacgtt gccaaggaga
      661 tggtcttctt tctcttctcc aagcactacc tgttctgcct cgcggccatc ttgctgtgtt
      721 tgattaaaac cttgtggtcc taaaaaaaaa aaaaaaaa
//
