LOCUS       NM_001144860             989 bp    mRNA    linear   ROD 22-SEP-2024
DEFINITION  Rattus norvegicus transmembrane protein 242 (Tmem242), mRNA.
ACCESSION   NM_001144860 XM_006227870
VERSION     NM_001144860.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 989)
  AUTHORS   Morgenstern,M., Peikert,C.D., Lubbert,P., Suppanz,I., Klemm,C.,
            Alka,O., Steiert,C., Naumenko,N., Schendzielorz,A., Melchionda,L.,
            Muhlhauser,W.W.D., Knapp,B., Busch,J.D., Stiller,S.B.,
            Dannenmaier,S., Lindau,C., Licheva,M., Eickhorst,C., Galbusera,R.,
            Zerbes,R.M., Ryan,M.T., Kraft,C., Kozjak-Pavlovic,V., Drepper,F.,
            Dennerlein,S., Oeljeklaus,S., Pfanner,N., Wiedemann,N. and
            Warscheid,B.
  TITLE     Quantitative high-confidence human mitochondrial proteome and its
            dynamics in cellular context
  JOURNAL   Cell Metab 33 (12), 2464-2483 (2021)
   PUBMED   34800366
REFERENCE   2  (bases 1 to 989)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On or before Dec 6, 2020 this sequence version replaced
            XM_006227870.3, NM_001144860.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CF109736.1, FM114121.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676785 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-124               JAXUCZ010000001.1  48424510-48424633   c
            125-225             JAXUCZ010000001.1  48423869-48423969   c
            226-363             JAXUCZ010000001.1  48417803-48417940   c
            364-989             JAXUCZ010000001.1  48397865-48398490   c
FEATURES             Location/Qualifiers
     source          1..989
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q11"
     gene            1..989
                     /gene="Tmem242"
                     /gene_synonym="C1H6orf35; RGD1307262"
                     /note="transmembrane protein 242"
                     /db_xref="GeneID:292228"
                     /db_xref="RGD:1307262"
     exon            1..124
                     /gene="Tmem242"
                     /gene_synonym="C1H6orf35; RGD1307262"
                     /inference="alignment:Splign:2.1.0"
     CDS             40..462
                     /gene="Tmem242"
                     /gene_synonym="C1H6orf35; RGD1307262"
                     /codon_start=1
                     /product="transmembrane protein 242"
                     /protein_id="NP_001138332.1"
                     /db_xref="GeneID:292228"
                     /db_xref="RGD:1307262"
                     /translation="MEASGSGSGESSAVEAPGSQDDRLFLIKGGIFLGSAAAAGMLAG
                     FVTTLSLAKKKSPEWFNKGTMATAALPESGSSLALRALGWGSLYAWCGVGVISFAVWK
                     ALGVHSMKDFRSKMQSIFPPIPKNPESADQWEEALKWK"
     exon            125..225
                     /gene="Tmem242"
                     /gene_synonym="C1H6orf35; RGD1307262"
                     /inference="alignment:Splign:2.1.0"
     exon            226..363
                     /gene="Tmem242"
                     /gene_synonym="C1H6orf35; RGD1307262"
                     /inference="alignment:Splign:2.1.0"
     exon            364..989
                     /gene="Tmem242"
                     /gene_synonym="C1H6orf35; RGD1307262"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcctctttag taacggaaac agtagaggag actttaaata tggaggcctc gggttctggg
       61 tccggggagt cttctgcagt agaagctcca gggtctcagg acgatcggct attcctgatt
      121 aaaggtggaa ttttccttgg ttctgcagcc gcagcgggaa tgctagctgg atttgttaca
      181 acattatcac tagctaaaaa gaaaagcccc gaatggttca ataagggcac tatggccacg
      241 gctgccttac cagagagtgg gtcttccctt gccctgcgag ccctgggctg gggttctctt
      301 tatgcctggt gtggagttgg cgtgatcagt tttgcagtgt ggaaagcctt gggagttcac
      361 agcatgaagg actttcggag taagatgcag tccatatttc caccaatccc caagaaccct
      421 gagtcagccg accagtggga ggaagccctg aagtggaaat gacacgggca tgggcgaccc
      481 cggaacaact gctgtgggga tggcagctct ggaaatgcca cgtctgaaaa agggctgagg
      541 tgactgctct ctaggaacac gtgctgatgg ctggcgaacc cacaggccac ggcatcacca
      601 tagctgtagt tggggcacat ggagggaatg ttttcctaag gctaagacaa acagtttaat
      661 tacctagacg ttcccctcaa ggaagggtcc cacgggcaaa tgtttctgtt tagaacagaa
      721 aaccatgttt catagtcatc agagagagag agagagagag agagagagag agagagagag
      781 agagagagat ctttgtaaag gtggcacact gctctccaag aggaccccag ttcatttccc
      841 agaacccctt tgggtgcctc acaacctcct gtgcctgcgg ctccatggga tctgaagtct
      901 tgtcctgatt tcatgcgcac ctcacttgtg tccacagcca caaaagtata cacaattaaa
      961 aaactaaaaa tctcttcttt gaaaactca
//
