LOCUS       XM_039087509            5747 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transmembrane protein 235 (Tmem235),
            transcript variant X3, mRNA.
ACCESSION   XM_039087509
VERSION     XM_039087509.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039087509.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5747
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5747
                     /gene="Tmem235"
                     /note="transmembrane protein 235; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1 EST,
                     4 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 65 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:688285"
                     /db_xref="RGD:1591141"
     CDS             4050..4685
                     /gene="Tmem235"
                     /codon_start=1
                     /product="transmembrane protein 235"
                     /protein_id="XP_038943437.1"
                     /db_xref="GeneID:688285"
                     /db_xref="RGD:1591141"
                     /translation="MALLAALFLSAALGALLSFALLAAAVASDYWYILEVADAGSSGG
                     ARLSSHSGLWRTCEGQNSCVPLIDPFASSGLEASPSIQHLLSLHRTVMVVLPLSLILI
                     VCGWVCGLLSSLSQSVPLLLATGCYFLLGGALTLAGLSVYICYSQLAFVEAARLYGLQ
                     HVQSVHISFGWSLALAWGSCASEVLSGALLLAAARLLTLSQHPGMPHSVIL"
ORIGIN      
        1 ctcactgatt ccaggaggat caacaggaag ccagtaagac cttcagaact caggaggcat
       61 gaagcagagt tagaaatgac agctcaagtg accttctgag gcttccagca gggctgagtg
      121 acatgcctgc agtttagctt gaggaacact ggaaaccaaa cataccgtcc tatcgggctt
      181 tggttctgtc tgcagcagcc cagcaaagcc caggctcagc gtgtgtgaag gattcaggcc
      241 acgcactttc ctggtggcag tggtgtgtat gcctgtgctc acttggatga ctcctgggag
      301 cccacttcag gagctgctct ggacatctgg ggcctggctg tctccagatc cacctaagac
      361 atcctggtgg cctccctgag ggcttagacc agctctgtgc aacagtaacg agcaaaacaa
      421 gggaaccagg gtacaacatt aggagctggg accattccca tcttaccaca gaaatcatag
      481 gagcggaggc taaacaacac atgtgagaga aaaggaccta tgtctagatg gctggtcaaa
      541 gccataggca agcatcaagg tggagatctg agcccaggtg gatctaggtc ccagtcaggg
      601 atgacaagac atatgcaaac aggccggcct gggcagaggc cagctctgcc acagtctcga
      661 cactgaggac cttactgcct gacatgagca aaagtcaccc tgaataaagt caggaaccag
      721 cacagcttcg agttttcggt ccactgtctc ggtctatagg tcttgctggg tttcaacagg
      781 gaggggccaa tctgggtctc ggctgtacgc ccatagtccc caaagtgggg cattctgaac
      841 tggtactgta ccctgaaccc tgcctcctgc agtcagctta cagagtttct tcttgctttc
      901 tgaacttcaa ggaggtaaaa agccagctag cgttccagag cacccttggt ggcaacagaa
      961 gaggcactgt tgaacttgtc atccaagttc ctgtcagaag ctgccagctg aactgacaag
     1021 ggtgggtgca cagagcaggt gccttctggt tactgcaagt gcagtcttgt gtgtgtgtgt
     1081 gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtga gagagagaga gagagagaga
     1141 gagagagaga gagaaagagc atggagaaca tggcaatggg aacatctttg agatgtgtgt
     1201 gtgtgagaga gacagagaga gagagagaga gagagagaga gagagagaga gagagagaga
     1261 gaacatggag aacatggaga acatggcaat gggaacatct ttcccacagc aaagccctag
     1321 ctggtggtag gggtggccag ctctgcaagt ggagcctcgc agacctgtgg gttccacttg
     1381 gtttggtact acttgctagt ccagttactg ccacagtcac atctcttagt ggctgtccag
     1441 tgaatcctca gcacatgtga gccttgtttc atccaagcaa gatgattttt ttttcctttt
     1501 tttttttttt ccggagctgg ggactgaacc cagggccttg agcttgctag gcaagtgctc
     1561 taccactgag ctaaatcccc aacccccgat ttttttctct tggtcttgca tctgctggac
     1621 ttagctttgt cctgcatgct ggatggatga atgggtctgt tggacagtga tttgtgtgag
     1681 gttcatctat gaaagggtgc ccagtaaaat tagctggcag atagctgatg gccagctgct
     1741 ggaggataat tcagctgaca gttccagatg cttccccaga ctcaggctga agacaatagc
     1801 caaagttagc tttgggaagg aagttcatca gtcacgtggc tggcactaga aacagactgc
     1861 ccagaaaatg taacctagtt aaagacaggc ttggatgcag acctgtctct gtcactcagg
     1921 attggactat cctcctctag gagcccacct ctgtctttga catctgtgac gataggttat
     1981 gctggcttgg aagagcccct gcagcaggga gaggccagca cacagcctgg ctggtatggc
     2041 ttacacactg aagagacaag taatgaatac agggtagttc taaggtagca cctgtcttgg
     2101 ggccattccc ggaaggacac tagcagaatt cattagggca acccccaggg accagcagtg
     2161 ctgcccagag gacaatgtca acagtgactt tggctgcaca gaaccaaggg gttgaaaatg
     2221 aagtgagtgt gggccgctca gcagaccatc atccaaccct tcagcttgag ggaattagtg
     2281 ctgtgaaggc cgatgcctct tgctgtcact tccctcctgg ggcagcagtg gcctggctgt
     2341 cgtctacctt aacagctgca ctagaccttt aagaacggga accttcgggg ctggggattt
     2401 agctcagtgg tagagcgctt acctaggaag cgcaaggccc tgggttcggt ccccagctcc
     2461 ggaaaaaaaa aaaaaaaaga accaaaaaaa aaaagaaaga acgggaacct ttgcagatca
     2521 gctcgaggag atagggggct cagtgggaga gaagcagggg cagaccagca catcaattta
     2581 gacttctacg caaggagcct ttgacagaaa gcaagactga ttgttttgtt gatgcactat
     2641 ggggtaactg ctaaatgacc tcacgtttgc atgacatgat tattccccag ctgtaatcag
     2701 agtttgggat gagagtttcc catctccctt tcctcctgcc cggggagggc tgcagctctc
     2761 tgagcaccca ttgggttctt agtcttcccc agatcactgg gtcaccgact accacctggt
     2821 tccagtgcag gggtgctaca ggacaacacc agctggagag gttgtcacac agcagatgca
     2881 gccggggatg gtttagtgta catgggaaga gaacatcttg cagtataatg gaggaattct
     2941 gtgcttgctt caattcttgt ttcagtggct ggattccact tgaaatattg ttttaataac
     3001 tttgctaaga ttgcttttta tctctggacc acattcctca aatatatata ttacagagag
     3061 atccaaataa tccaagaaag ggtttggttg acctgagtgt caaagctgtg tccaagaaag
     3121 accacctctg tccctcttct ttaggttctg accacccggg gcagtgatcc agaggccctc
     3181 ccattctcca aaacgtaacc agctcatcca gcttcagcct gggttcctct tgggggaggc
     3241 ctcttccctg ctcctttgcc ttgcctgtta ttaccatctg actcctgtcc tccagagatc
     3301 tgtatatgtg ccctgaaagt gagaagcagt gctttttctc ccagcctccg ggtgtttatc
     3361 ccactggtcc tctagactaa tggaaaccag ggccatgctg agatgtgtca caccccgagt
     3421 cttcctaaat gtgcccagca gggtctgtct accacccatc cccctccaca aactttcctc
     3481 ctttaggagc tttggtgcag tggtccagct gctgacagct gctccacagc cctgaggggc
     3541 aggggaagag catcttagac tcacctctga tcgtcttccc aacaccacag tgcaccgtgc
     3601 ctagtctgtg acgtaattgg gatttgagcc caaatttact gtctccagct ctgcctggac
     3661 ctgagatttc tccctcttcc cttactgagt ggccagcaca gaaaagtgat acatttcctt
     3721 gcatacttgg ccactcgtgc ggtggcagaa atgcagtggt cacagaagaa cctaggacag
     3781 ggtctctccc acgaccctac cctccactta acctctgctt cctgccagcc tgctccacaa
     3841 cacccctccc atgccctctc ctgctgatgc tcccgccctc ccatcgccta aaccttcact
     3901 agcctgcttc atttcagtcc tgaaccccga ctgttcccag cccacagttc tcctcttcac
     3961 ctccctgaca cccggtgcag ccagtcccta gcttctcttc ccactcagcc ctgcctcccg
     4021 tggtgcgctg ctgtccgatt ccagctcaca tggccctgct agccgcgttg tttctgagtg
     4081 cagccctggg cgccttactc agtttcgcgc tgctggcagc ggcggtcgcc agcgactact
     4141 ggtatatcct ggaggtggca gatgctggca gctcgggcgg cgcgcggctc tcctcgcatt
     4201 ctgggctctg gcgcacctgt gaaggacaga acagctgtgt gcccctgatc gacccttttg
     4261 ccagctccgg cctggaagct tctccctcca tacagcacct gctctccctg catcgcacag
     4321 tcatggtagt cttgcctttg agcctcatcc tcatcgtgtg tggttgggtc tgcggcttgc
     4381 tcagctccct gtcccagagt gtccctctgc tgctggccac aggctgctac ttcttgctag
     4441 ggggcgccct gaccctggca gggctcagcg tctacatctg ctactcacag ctggccttcg
     4501 tggaggctgc ccgcctgtat ggcctgcagc acgtgcagag cgtgcacatc agcttcggct
     4561 ggtcactggc cctggcctgg ggctcctgcg cctcagaggt gctcagtggt gccctcctgc
     4621 tcgcagctgc ccgtctcctc accctgagcc agcacccagg aatgcctcac tctgtcatcc
     4681 tctgagtccc agtgtggcag gggggtgggg agaaggtcat ctcaggcacc ctcaacgttt
     4741 gctggagtcc tggctgggaa gaggccctgg ggatggcttg tggcagaagt gttcacctcc
     4801 actccatctg gacttgagaa aggcaggtgg gtagccggtg cctccagtca cgagcttttg
     4861 atggtacggt ctggctgggg tgcgtcaggg ctctctgtgt ccaggaggtg ctcttgctct
     4921 gggggatgtg gcccactcca acctaggcag ctgagactgt ttggcgggac ccctgggttc
     4981 agttttgttc cctttcccca cgggaggttg atggggagga ggctcgaggc tggatgggag
     5041 ggcacacctt ctaggcaagg tggacctttg ggagtcagtc ctcctcctca gcaagctgct
     5101 gcccatgctg gcctggaact tctctttgta gcaacagcca gggggatgtc tgaaactggc
     5161 cacattaggg gtgagctggg accatgcctg gccagcccct gggatgtctg gacagaggaa
     5221 ctccgcagag ggaggcagaa acctgtcctg gagagactcg ctgcagatgt ggatgggtca
     5281 gtgcacaggt ccaggcctgc agcccgctcc ctgcctgggg cagcacggat gagaactgaa
     5341 ccagctctgg ccacacgaga ggggacacac ctgtgtcatg tatctggaca gtaggtagct
     5401 ataacttagg ggttgtgtag taccccaaag ccccaaacgg ctgattctgg tgtagaccct
     5461 tcctgagttt gggatatgta ctagggaaga gaaggtagta tttttcaagg tttggtccca
     5521 gcagtatccc taagccactt tcagttgctt ctaagggtct ggggagcctc tgaggggtct
     5581 ggggaacctc tgaggagcca ggtttaatgg gacccactgg ggacaaagga ctggagctga
     5641 tggagaccct gccttccaat ttgtgttcaa acctttgcca ttccatgtac gagcacttcc
     5701 aagtgtctga gtaaattagc tgtgatgtat atttttcact tacagta
//
