LOCUS       NM_001305124            1186 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus transmembrane protein 220 (Tmem220), transcript
            variant 1, mRNA.
ACCESSION   NM_001305124 XM_001078792 XM_213341
VERSION     NM_001305124.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On or before Feb 25, 2015 this sequence version replaced
            XM_213341.8, XM_001078792.5.
            
            Transcript Variant: This variant (1) encodes the longer isoform
            (1).
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ219853.1, CF113792.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760386, SAMEA5760393
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-102               JAXUCZ010000010.1  52218790-52218891
            103-132             JAXUCZ010000010.1  52219476-52219505
            133-193             JAXUCZ010000010.1  52222449-52222509
            194-317             JAXUCZ010000010.1  52223604-52223727
            318-377             JAXUCZ010000010.1  52224692-52224751
            378-1186            JAXUCZ010000010.1  52226996-52227804
FEATURES             Location/Qualifiers
     source          1..1186
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q24"
     gene            1..1186
                     /gene="Tmem220"
                     /gene_synonym="RGD1309576"
                     /note="transmembrane protein 220"
                     /db_xref="GeneID:287405"
                     /db_xref="RGD:1309576"
     exon            1..102
                     /gene="Tmem220"
                     /gene_synonym="RGD1309576"
                     /inference="alignment:Splign:2.1.0"
     CDS             10..513
                     /gene="Tmem220"
                     /gene_synonym="RGD1309576"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="transmembrane protein 220 isoform 1"
                     /protein_id="NP_001292053.1"
                     /db_xref="GeneID:287405"
                     /db_xref="RGD:1309576"
                     /translation="MASAVAPWAPGLWRACNALMAAFFALAAVVQVNDPDAELWVVVY
                     MIPAVLTLLVGFNPLVTGNCIWKSVSAIHMLFCALWAGGLAYHFLLHAKQSILNEEEG
                     RELSGLVIVTAWMALCHSSSKNSVGGRMHLAIAVVITLFPLLSWVYVYMNKEMRSSWP
                     THCKTVI"
     exon            103..132
                     /gene="Tmem220"
                     /gene_synonym="RGD1309576"
                     /inference="alignment:Splign:2.1.0"
     exon            133..193
                     /gene="Tmem220"
                     /gene_synonym="RGD1309576"
                     /inference="alignment:Splign:2.1.0"
     exon            194..317
                     /gene="Tmem220"
                     /gene_synonym="RGD1309576"
                     /inference="alignment:Splign:2.1.0"
     exon            318..377
                     /gene="Tmem220"
                     /gene_synonym="RGD1309576"
                     /inference="alignment:Splign:2.1.0"
     exon            378..1186
                     /gene="Tmem220"
                     /gene_synonym="RGD1309576"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ttccaggcca tggcgtcagc agtggctcct tgggctcctg gcttgtggcg ggcctgcaac
       61 gcgctcatgg ctgctttctt cgccctggcc gctgtggtgc aggtgaacga tccagatgca
      121 gagttgtggg tggtggtgta tatgatccca gcagtactta ccctgcttgt tgggtttaat
      181 cctcttgtca caggcaactg catctggaag agtgtgtctg cgatacacat gctgttttgc
      241 gcgctgtggg ccggtggctt ggcgtaccac ttcttgcttc atgcaaagca gagcatcctg
      301 aatgaggaag aaggcaggga gctgtccggc ctggtgattg tcacagcatg gatggcactg
      361 tgccacagct catccaagaa ttcagtcggt ggaagaatgc acttggctat tgctgttgta
      421 atcaccctat tcccgctcct gtcgtgggtc tacgtgtaca tgaacaagga gatgcggtcc
      481 tcctggccaa ctcactgcaa gacagtcatt taaatgaatc caacagtgtt taaattggta
      541 ctttcaacat cttatacgca ctggggaaac aggccagttt cccagtttat ttaaaaaaca
      601 aaaacaaaaa actggagtgg ataccagaga tgatttaaag tcttgagaat gtaacaaggc
      661 cgcccacaat gtgatggaag attgactagg acagataagg actgggggct aagtctccag
      721 aggtctcttc tgtgacagca gtggaccagg caatgagcag aaacttgagt ttgaatccag
      781 ctttagcact atgcgctagg ggaaaaccca cgaatctcct ggtagatatt tcctcacatg
      841 taaggtaaga tgtcagatcg ctttagttac cacaaccaaa ctaatacaaa ggcgctctga
      901 gaaggtgaag ctcgagaatt ccagaggaag tagagtgagg ggagctgagg ctgggtaatg
      961 tgctgacatg gagggaggtt caagaccgca attccaaact aatctcaatg gacttgactg
     1021 gttcagctgc acggaaccca gaaaaatttc aggacaggca agccaaatga aagtagaaaa
     1081 aaaatagaaa ttaaagaaaa tatagaaaag ataacttcag agttaagcaa gaatagggga
     1141 tattaatcat tgtttcaata aatattaaaa ataaaaaacc ctggct
//
