LOCUS       NM_001014055            2336 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus transmembrane protein 209 (Tmem209), transcript
            variant 1, mRNA.
ACCESSION   NM_001014055 XM_039107517 XM_231568
VERSION     NM_001014055.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2336)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2336)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On or before May 27, 2021 this sequence version replaced
            XM_039107517.1, NM_001014055.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360186.400604.1,
                                           SRR21887622.484531.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-66                JAXUCZ010000004.1  60095974-60096039   c
            67-203              JAXUCZ010000004.1  60094993-60095129   c
            204-262             JAXUCZ010000004.1  60094785-60094843   c
            263-394             JAXUCZ010000004.1  60092876-60093007   c
            395-636             JAXUCZ010000004.1  60091848-60092089   c
            637-838             JAXUCZ010000004.1  60088916-60089117   c
            839-1014            JAXUCZ010000004.1  60084961-60085136   c
            1015-1086           JAXUCZ010000004.1  60084240-60084311   c
            1087-1183           JAXUCZ010000004.1  60081791-60081887   c
            1184-1309           JAXUCZ010000004.1  60080770-60080895   c
            1310-1407           JAXUCZ010000004.1  60079423-60079520   c
            1408-1522           JAXUCZ010000004.1  60077870-60077984   c
            1523-1620           JAXUCZ010000004.1  60077685-60077782   c
            1621-1694           JAXUCZ010000004.1  60075848-60075921   c
            1695-2336           JAXUCZ010000004.1  60070346-60070987   c
FEATURES             Location/Qualifiers
     source          1..2336
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q22"
     gene            1..2336
                     /gene="Tmem209"
                     /gene_synonym="RGD1309682"
                     /note="transmembrane protein 209"
                     /db_xref="GeneID:312200"
                     /db_xref="RGD:1309682"
     exon            1..66
                     /gene="Tmem209"
                     /gene_synonym="RGD1309682"
                     /inference="alignment:Splign:2.1.0"
     CDS             64..1749
                     /gene="Tmem209"
                     /gene_synonym="RGD1309682"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="transmembrane protein 209 isoform 1"
                     /protein_id="NP_001014077.1"
                     /db_xref="GeneID:312200"
                     /db_xref="RGD:1309682"
                     /translation="MMQGEVSPSPSLIDRTIRMRKETESRKVVLAWGLLNVSMAGMIY
                     TEMTGKLISTYYNVTYWPLWYIELALASLFSLNALFDFWRYFKYTVAPTSLVVSPGQQ
                     TLLGLKPAVVQTTPPRDLAATQISPSPPSPSIQGQSVLSYSPSRSPSTSPKFATSCMT
                     GYSPQLQGLSSGGLGSYSPAVTYSPVSGYSKLASFSLSPSSPYPTTVGPVESSGLRAR
                     YRSPPTAYNSPTDKEDYMTDLRTLDTFLRSEEEKQHRVKLGSPDSTSPSTSPTFWNYS
                     RSVGDYAQTLKKFQYQLACRSQAPCANKDEADLISKQAAEEVWARVTMNRQLLDHMDS
                     WTAKFRNWISETILVPLVQEIESVSTQMRRMGCPELQIGEASVTSLKQAALVKAPLIP
                     TLNAIVQYLDLTPNQEYLFERIKELSQGGCMSSFRWNRGGDFKGRRWDTDLPTDSAII
                     MHVFCTYLDSRLPPHPKYPDGKTFTSQHFVQTPNKPDVTNENVFCVYQSAINPPHYEL
                     IYQRHVYSLPKGRNNMFHTLLMFLYIIKTKESGMLGRVNLGLSGVNILWIFGE"
     exon            67..203
                     /gene="Tmem209"
                     /gene_synonym="RGD1309682"
                     /inference="alignment:Splign:2.1.0"
     exon            204..262
                     /gene="Tmem209"
                     /gene_synonym="RGD1309682"
                     /inference="alignment:Splign:2.1.0"
     exon            263..394
                     /gene="Tmem209"
                     /gene_synonym="RGD1309682"
                     /inference="alignment:Splign:2.1.0"
     exon            395..636
                     /gene="Tmem209"
                     /gene_synonym="RGD1309682"
                     /inference="alignment:Splign:2.1.0"
     exon            637..838
                     /gene="Tmem209"
                     /gene_synonym="RGD1309682"
                     /inference="alignment:Splign:2.1.0"
     exon            839..1014
                     /gene="Tmem209"
                     /gene_synonym="RGD1309682"
                     /inference="alignment:Splign:2.1.0"
     exon            1015..1086
                     /gene="Tmem209"
                     /gene_synonym="RGD1309682"
                     /inference="alignment:Splign:2.1.0"
     exon            1087..1183
                     /gene="Tmem209"
                     /gene_synonym="RGD1309682"
                     /inference="alignment:Splign:2.1.0"
     exon            1184..1309
                     /gene="Tmem209"
                     /gene_synonym="RGD1309682"
                     /inference="alignment:Splign:2.1.0"
     exon            1310..1407
                     /gene="Tmem209"
                     /gene_synonym="RGD1309682"
                     /inference="alignment:Splign:2.1.0"
     exon            1408..1522
                     /gene="Tmem209"
                     /gene_synonym="RGD1309682"
                     /inference="alignment:Splign:2.1.0"
     exon            1523..1620
                     /gene="Tmem209"
                     /gene_synonym="RGD1309682"
                     /inference="alignment:Splign:2.1.0"
     exon            1621..1694
                     /gene="Tmem209"
                     /gene_synonym="RGD1309682"
                     /inference="alignment:Splign:2.1.0"
     exon            1695..2336
                     /gene="Tmem209"
                     /gene_synonym="RGD1309682"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aagcgcggct ttgcgcatgt gcagtaggga gtggcgcgag tacacggctt cctgctgaag
       61 aacatgatgc aaggagaagt aagccccagt ccttccctta ttgatagaac catcaggatg
      121 agaaaggaaa cagaatctag gaaagtggtt ttagcctggg gacttctaaa tgtatccatg
      181 gctggaatga tatatactga aatgactgga aagttaatta gtacatatta taatgtgaca
      241 tactggcccc tctggtatat tgaactcgcc ctcgcctcac tcttcagtct taatgccttg
      301 tttgattttt ggagatactt caaatatact gtagcaccta caagtctggt agttagccct
      361 ggacagcaaa ccttgttagg gctgaaacca gctgtggtgc agaccacacc tccccgtgat
      421 ttggcggcca cccaaatctc tccgtcccct ccttcccctt cgattcaagg tcagagtgtg
      481 ttgagttata gcccatcgcg ctcgcccagt accagtccca agtttgccac cagctgcatg
      541 actgggtata gtcctcaact gcaaggcctg tcgtcaggag gccttggctc gtacagccct
      601 gctgtgactt actcgcctgt cagtggctat agtaagttgg cgagctttag tctgtctcct
      661 tcttctccct accctaccac cgtgggccct gtggagagca gtggattgag agctcgctac
      721 cgttctccac ccacggccta taactcaccc accgacaagg aggactacat gacagacctg
      781 agaactttgg acacgttcct tagaagtgag gaagagaaac agcatagagt gaagctgggg
      841 agcccagact ctacctctcc atctaccagc cctaccttct ggaattacag tcgttctgtg
      901 ggggactatg cacaaacctt aaagaagttt cagtatcagc ttgcctgtag atctcaggcc
      961 ccatgtgcta acaaagatga agccgatctc atttctaagc aagctgccga agaggtttgg
     1021 gcaagagtga ctatgaatag acagcttctt gatcacatgg attcatggac agccaaattt
     1081 agaaattgga tcagtgagac aatattagtg ccacttgtgc aagagattga gtctgtcagc
     1141 acccagatga gacggatggg ctgtccagag ctacaaatag gagaggcgag tgttaccagc
     1201 ttgaaacaag ctgccctggt caaagctcct ctcatcccaa ctctgaatgc aattgtgcag
     1261 tatttagacc taacaccaaa tcaggagtac ttgtttgaaa gaatcaaaga actttctcag
     1321 ggaggctgta tgagctcatt ccgatggaac cgaggtggag acttcaaagg acgccgctgg
     1381 gacacagacc tgcccactga ctctgctatc atcatgcatg tgttttgcac ctaccttgat
     1441 tccagattac ctccacaccc taagtaccct gacggtaaaa cattcacttc tcagcacttt
     1501 gttcagacac caaataaacc agatgttacg aatgaaaatg tgttctgtgt ttatcagagt
     1561 gctatcaacc ctccacacta tgagctaatc tatcagcggc acgtctacag tcttccaaag
     1621 ggcagaaata acatgtttca tacgttgttg atgttcctgt acatcataaa gaccaaagag
     1681 tcaggaatgc ttgggagagt taatcttggg ctgtctggtg tgaatatttt atggattttt
     1741 ggagagtagt ccatcgttta attccaaaca tttggacttt gattgtaatt ggcctggaag
     1801 gagttgaagc taagtatgtc cgcgtaagca cctcttccga aataagatgc atgttttgct
     1861 gcagacttgt tagatttcac aggaaacaaa ctgagggaag cttgtcatga acatgacaaa
     1921 gcctgcgtct tctattccat ggaacattta ttatgtgggg tgactccaaa actgcagtcc
     1981 tgggctgtga actagtgcgg ttcccttcac ttggtgaggg caaggacgcc tctccatttt
     2041 aaccgcagtg agaatctgca cgttgttctt taccatcgag actggctctc actgttggag
     2101 tagtgtaagt actcaggtga accttggtag ctctctttgt tgtatcttta tttccccagt
     2161 gttctacaag tcagcctaaa gctgaaatga aattaatttc taagtgatgt agtaattaat
     2221 cctgctgagc catctcccca gccccctatt ggtttttttt aatattaaaa gagatttgat
     2281 aatattggga tcttgaaagg tcaatgcttg cattaaaatt agctgataaa attaaa
//
