LOCUS       NM_199098               1821 bp    mRNA    linear   ROD 12-JUN-2024
DEFINITION  Rattus norvegicus transmembrane protein 19 (Tmem19), mRNA.
ACCESSION   NM_199098 XM_216896
VERSION     NM_199098.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1821)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1821)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Mar 15, 2021 this sequence version replaced NM_199098.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC061871.1, SRR26643293.39941.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN12840110,
                                           SAMN12840111 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            RefSeq Select criteria           :: based on conservation,
                                                expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-415               JAXUCZ010000007.1  52870990-52871404   c
            416-529             JAXUCZ010000007.1  52868554-52868667   c
            530-667             JAXUCZ010000007.1  52855501-52855638   c
            668-922             JAXUCZ010000007.1  52854903-52855157   c
            923-1132            JAXUCZ010000007.1  52851198-52851407   c
            1133-1821           JAXUCZ010000007.1  52844985-52845673   c
FEATURES             Location/Qualifiers
     source          1..1821
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q22"
     gene            1..1821
                     /gene="Tmem19"
                     /note="transmembrane protein 19"
                     /db_xref="GeneID:299800"
                     /db_xref="RGD:735209"
     exon            1..415
                     /gene="Tmem19"
                     /inference="alignment:Splign:2.1.0"
     CDS             286..1296
                     /gene="Tmem19"
                     /codon_start=1
                     /product="transmembrane protein 19"
                     /protein_id="NP_954529.2"
                     /db_xref="GeneID:299800"
                     /db_xref="RGD:735209"
                     /translation="MTDLDDSTCKKYIKMITNIVILSLIICISLAFWIMSMTASTYYG
                     SLRPVSPWRWLFSVVVSVVISCNGFKKKSLDHSGALGGLVVGFILTIANFSFFTSLLM
                     FFLTSSKLTKWRGEMKKRLDSEYKEGGQRNWVQVFCNGGVPTELALLYMIENGPGEMP
                     IDFAKQHTASWMCLSLLAALASSAGDTWASEVAPVLSKSSPRLITTWEKVPVGTNGGV
                     TAVGLVSSLLGGTFVGLAYFLTQLVFVNDLDISAPQWPLIAFGGLAGLLGSIVDSFLG
                     ATMQFSGLDESTGLVVSSPTQETKHISGKPILDNNAVNLFSSVLVALLLPTAASGFWP
                     TV"
     exon            416..529
                     /gene="Tmem19"
                     /inference="alignment:Splign:2.1.0"
     exon            530..667
                     /gene="Tmem19"
                     /inference="alignment:Splign:2.1.0"
     exon            668..922
                     /gene="Tmem19"
                     /inference="alignment:Splign:2.1.0"
     exon            923..1132
                     /gene="Tmem19"
                     /inference="alignment:Splign:2.1.0"
     exon            1133..1821
                     /gene="Tmem19"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gttaggtggg agcagcgtgc tgtcctgctg tcctggcgac tcctccctgc ttgctttcat
       61 tttccagttg ggggtgttga cctccccggg tcgagccgga gctctgcact agcagcagtg
      121 actcgaagtt ttggatttac gattctattt tgtcgttcta ttggtggaag atgttggtat
      181 ttctccgtac ctctaaagga gtattgttgc aagaaactta aatgacttag ttcatctgaa
      241 atgctatcta ttccctcccc tcaggtgctc ctagctctgt tttccatgac agatcttgac
      301 gacagtacgt gcaaaaagta tataaagatg attaccaata tagtaatatt gagcctgatc
      361 atttgcattt ccctagcgtt ctggattatg tcaatgactg ctagcaccta ttatggtagc
      421 ttgcggcctg tttctccgtg gcgttggctc ttctccgttg ttgtctctgt tgtgatctcc
      481 tgtaatggct ttaaaaagaa aagtctagat cacagcgggg ctttaggagg gctggtggtc
      541 ggattcatct taaccattgc caatttcagc ttttttacct ctttgctgat gtttttcctt
      601 acatcttcaa aactcacgaa atggagagga gaaatgaaga agcgtctaga ttcagagtat
      661 aaagaaggag gtcaaaggaa ttgggtccag gtattctgta atggaggcgt tcccacagag
      721 ctggccctgc tctacatgat agaaaatggc cctggggaaa tgcccataga ttttgccaag
      781 caacacactg cttcctggat gtgtttgtct ctcctggctg cactggcctc ctctgcggga
      841 gacacctggg cttccgaagt tgccccagtt ctgagcaaaa gctcacctcg actcataaca
      901 acctgggaga aagttccagt tggaaccaat ggaggagtca cagcagtggg acttgtctcc
      961 agcctactcg gtggtacctt cgtgggcctg gcgtacttcc ttacacagct ggtgtttgtg
     1021 aatgatttag acatttctgc tccacagtgg cccctcattg catttggagg cctggccggg
     1081 ttattaggat caattgtgga ctcattctta ggggcaacaa tgcagttctc tgggctggat
     1141 gaaagcactg gcctggtggt cagtagccca acacaggaga ccaagcacat atcagggaag
     1201 cccattctgg ataacaatgc tgtgaatctg ttttcctcag ttttggtggc cctcttgctc
     1261 ccaacagctg cttcgggatt ttggcccaca gtgtgaactt ttttttcctt cccaaccagt
     1321 tgatactggt gagtccagcc agacttgcaa tgggaaaggt tttttttcag tgaataataa
     1381 attcggggaa cttgggaatg ctggcttctc ccatgttctg ctgtggccgc ataccacggg
     1441 ctcccttcag ctcccttagc agctgatgtc tttctggtgg aaggggaaag tgcatacaag
     1501 ttgtccacat tcatcctctg tgggtaaaga ttcacgaaca atggagctgc tcttggcctc
     1561 agtggctgaa ctgaaacatc aaatgttctc tgtaaaatgt tattttgttc agtttctaaa
     1621 agtagtctgt tgggctggag agatggctca gcggttaaaa gcaccgactg ctctcccaga
     1681 ggtcctgagt tcaaatccca gcaaccacat ggtggctcac aaccatctgt aatgggatct
     1741 ggtgccctct tctggcctgc ggtcacatat gcaggcagaa tgctgtacat aaaataaata
     1801 aataaatctt taaaagcagt c
//
