LOCUS       XM_039101888            1488 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transmembrane protein 171 (Tmem171),
            transcript variant X3, mRNA.
ACCESSION   XM_039101888
VERSION     XM_039101888.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039101888.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1488
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1488
                     /gene="Tmem171"
                     /gene_synonym="Prp2"
                     /note="transmembrane protein 171; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 7
                     ESTs, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 10 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:293634"
                     /db_xref="RGD:1359492"
     CDS             430..1401
                     /gene="Tmem171"
                     /gene_synonym="Prp2"
                     /codon_start=1
                     /product="transmembrane protein 171 isoform X3"
                     /protein_id="XP_038957816.1"
                     /db_xref="GeneID:293634"
                     /db_xref="RGD:1359492"
                     /translation="MSSVGTAEPDGDQRDRQVSKLIFFLFVFGAVLLCVGILISIFGY
                     QACQYKPLSHCSMVLKIAGPSCAVMGLGTVILARSRARLQLRERQRQGHQDPDQSFFC
                     GESRQFAQCLIFGFLFLTSGMLISILGIWVPGCGSDWAQEPLNETNSGEGEPQICSFL
                     SLQIMGPLIVLVGLCFFVVAHVKKKSNLSSSRDTSEIEGGHTHSTEPVHITVGDSVII
                     FPPPPPPYFAESSAAAPSPGANSLHRIENPPSYSSLFNLSRTPTPENQGAASERDREV
                     IYTISGPGSSSESSHTGHLPLDLPPRYEEKETAPATPLGAPSESSPP"
ORIGIN      
        1 gccgccgcac ccgcgagccc ggcactgcct ggccctctgc acaccgagga ggcccgccct
       61 ctgcgcccgg acgcgcagag ggtgtgcgtg gagccagggg tgtggcggag agtcccagga
      121 ccaaggcagg tgtccctgtt ttgagtgcac ccttaagggg gccgctgaag tattcctcac
      181 cttagtttgg atcaggaact aacatatgtg ccagtaggtg tccctgagtg aaagaaacta
      241 caaacctagt ttggtgcttc ctcggcttgt attgtcggtg tttggaagtt tgccttaaaa
      301 gagttgaagc cccgcgactg gctgcaaagc cgaagatccc aagaacacaa gtctgcaact
      361 gtcagaggga aggacacaca ttcctctttc acatcgggga gcagtgagga ggccttttct
      421 tttctggcca tgtcttctgt aggaactgct gagccagacg gagaccagag ggaccgacaa
      481 gtcagcaaac tcatcttctt cctctttgtc ttcggtgcag tcctgttgtg tgtggggatc
      541 ctgatctcca tctttgggta ccaggcatgc caatataagc ctctctcaca ctgcagcatg
      601 gtgctaaaga ttgctgggcc ttcctgtgca gtgatggggc tgggaactgt gattctagcc
      661 cggtcccggg cacgcctgca actgagggag cgacagcggc agggccatca ggaccctgac
      721 caatccttct tctgtggaga gagccgccag tttgcccagt gtctcatctt tgggttcttg
      781 tttctgacca gtggcatgct cattagcata ctgggtatct gggtgccagg atgtggctca
      841 gactgggcac aggaaccact gaacgagaca aacagtggag aaggagaacc ccagatctgc
      901 agcttccttt ctctgcagat catggggccc ttgattgtgc tcgtaggatt gtgtttcttt
      961 gtggtggccc atgttaagaa gaaaagcaac ctgagttcaa gccgagatac ctctgaaatc
     1021 gaaggtggac acacccacag tacagaacct gtccacatca ctgtgggtga ctcagtgata
     1081 atattcccgc cccctccacc accttacttt gctgagtctt cagcagcagc tccctctcct
     1141 ggggctaaca gcctgcaccg gatcgaaaac ccaccttcct actccagtct ttttaatctc
     1201 agcaggaccc caactcctga gaaccaggga gcagcctctg agagagatcg ggaagtcata
     1261 tacaccattt ctgggccagg ttcatcctcc gagagttcac acactgggca tcttccgctg
     1321 gacctgcccc cgagatatga agaaaaagag actgctccag ccacaccctt gggtgcccct
     1381 tctgagtcat ccccaccgtg agctatggac tcaggcagat gatggacagt tttatatata
     1441 tcatggattg ttttttattt aattttttta ataaaaaata caataaca
//
