LOCUS       NM_001010961            1878 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus transmembrane protein 17 (Tmem17), mRNA.
ACCESSION   NM_001010961 XM_341261
VERSION     NM_001010961.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1878)
  AUTHORS   Li,C., Jensen,V.L., Park,K., Kennedy,J., Garcia-Gonzalo,F.R.,
            Romani,M., De Mori,R., Bruel,A.L., Gaillard,D., Doray,B., Lopez,E.,
            Riviere,J.B., Faivre,L., Thauvin-Robinet,C., Reiter,J.F.,
            Blacque,O.E., Valente,E.M. and Leroux,M.R.
  TITLE     MKS5 and CEP290 Dependent Assembly Pathway of the Ciliary
            Transition Zone
  JOURNAL   PLoS Biol 14 (3), e1002416 (2016)
   PUBMED   26982032
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1878)
  AUTHORS   Chih,B., Liu,P., Chinn,Y., Chalouni,C., Komuves,L.G., Hass,P.E.,
            Sandoval,W. and Peterson,A.S.
  TITLE     A ciliopathy complex at the transition zone protects the cilia as a
            privileged membrane domain
  JOURNAL   Nat Cell Biol 14 (1), 61-72 (2011)
   PUBMED   22179047
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000014.1.
            
            On Mar 18, 2021 this sequence version replaced NM_001010961.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC089059.1, FQ228748.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-508               JAXUCZ010000014.1  100719672-100720179
            509-612             JAXUCZ010000014.1  100723171-100723274
            613-726             JAXUCZ010000014.1  100723411-100723524
            727-1878            JAXUCZ010000014.1  100724315-100725466
FEATURES             Location/Qualifiers
     source          1..1878
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /map="14q22"
     gene            1..1878
                     /gene="Tmem17"
                     /note="transmembrane protein 17"
                     /db_xref="GeneID:360985"
                     /db_xref="RGD:1310566"
     exon            1..508
                     /gene="Tmem17"
                     /inference="alignment:Splign:2.1.0"
     CDS             409..1005
                     /gene="Tmem17"
                     /codon_start=1
                     /product="transmembrane protein 17"
                     /protein_id="NP_001010961.1"
                     /db_xref="GeneID:360985"
                     /db_xref="RGD:1310566"
                     /translation="MELPDPVRQRLSNLSLTMFGDSSRTGPESSEAADNEMVSSLPLQ
                     MSLYFNSYFFPLWWVSCIVMLHLKYSVLPDYYKFIVITVVILITLIEAIRLYLGCMGN
                     LQEKVPELAGFWLLSLLLQLPLLLFLLLNEGLKNLPLEKAIHSIFTVFLTFQVISAFL
                     TLKKMVNQLAARFHLQDFDQLSASSATGRRARQSSEEL"
     exon            509..612
                     /gene="Tmem17"
                     /inference="alignment:Splign:2.1.0"
     exon            613..726
                     /gene="Tmem17"
                     /inference="alignment:Splign:2.1.0"
     exon            727..1878
                     /gene="Tmem17"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggaacctact gggtcaagcg cattctttaa gatttatgtt tcttttccat ttccctctag
       61 aaatggcgca ccaattttac ggaaaaactg ccttggtgtg agagctcctt gtggctcagc
      121 tcaggaccaa atggcttatt acttgtgatc atcttaagac gctgcagctt taaagcaaga
      181 cggaggaacc ctccattttc agcagcacta ggccacattc ggcagcgggc cggtggctcc
      241 cgctcgcctc tccgcggaga aggctctgga ggactctgtt ccgcgccggg cagcccagga
      301 accaggtccc cagcggccag cacagccctg ttgccaaggg aaccgccacg cgccgctgag
      361 ctggcccact agcgggaacg tgaggggata ggcccgggca ggccagacat ggagctgccg
      421 gaccctgttc gtcagcgctt gagcaacctc agcctcacca tgttcggcga ctccagccgt
      481 accgggccag agtccagtga ggccgcggat aacgaaatgg tctccagcct gcccctgcag
      541 atgtcacttt actttaactc ttactttttc ccactctggt gggtgagctg catcgtgatg
      601 ctgcacctga agtattcggt tttgcctgac tactataaat tcattgtgat tactgtggtc
      661 atcctcataa ccttgattga ggccatccgg ctgtacctgg gctgcatggg taacctgcag
      721 gagaaggttc ccgagctggc cggcttttgg cttctgagcc ttctactgca gttgccttta
      781 ctccttttcc tgctccttaa tgaaggcctg aagaatctgc ccttggagaa agcgattcac
      841 agcatcttca ccgtcttcct tactttccaa gtcatctcgg cgtttctgac cctgaagaaa
      901 atggtcaacc agctggcagc ccgtttccac ctccaggact tcgatcagct gtctgcgagc
      961 agcgcgactg ggaggcgggc taggcaaagc tcggaagagc tctgaccgcg tgctgacggt
     1021 gacgtcacca agatgatgca agaggaccca gaagcgagtg acaggacatc gagtcaggcc
     1081 tgaggaaggg ggcacgcgtg ttggggtgtg tcctctagct ctgaagcccc ccatggagga
     1141 aatgcccagg cttactcgta tcaaccctgc agccgagggg atgtccagac tcggcatttc
     1201 ttgtttctga tgttggcttc gaaggtgttt cttcatgagt gtgttggcag ttgcaaaacc
     1261 acctcttctg tcatgtttct ggttataatc tgtgatgaga aatgtgtggc acttcagaga
     1321 aaatcagctt tgtccactgg aatctcaccg agtgtgtcaa caccccctag gacatgccct
     1381 aacccagcag gagttggcca atataaaacg aactccgtat tcttgtgggc tttctgtttc
     1441 ctttgctgtt gccttggcat ttctgtctta ttattagaga gtaaaaaggt gggaaggagt
     1501 tgggaagggg gaaacatgaa aagtatggta tgaagaaaag aactaataaa agaagtacgt
     1561 gacgtttctt ttaaacttgt cagctatcta actggctgcc ctgggcttct tggatcatat
     1621 ggaaaccctt gatcaatagg atgcctgtgt gttaggtgga attttaacca agaccaaagt
     1681 attgggtgtg ctagtactca gttccaagtg tctttccagt tgttaccttg cagtgaaaga
     1741 ggcaggcaca tcgtggtgtc tgaagaatat ttatcacaaa tatttcaagc tttataaatc
     1801 catgttcagt atttgtggtg atggcagcta agtccttttt accataaatc gtaagctctt
     1861 tatattaaac tatcagca
//
