LOCUS       NM_001271309            1807 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus transmembrane protein 120B (Tmem120b), mRNA.
ACCESSION   NM_001271309 XM_003752590
VERSION     NM_001271309.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1807)
  AUTHORS   Batrakou,D.G., de Las Heras,J.I., Czapiewski,R., Mouras,R. and
            Schirmer,E.C.
  TITLE     TMEM120A and B: Nuclear Envelope Transmembrane Proteins Important
            for Adipocyte Differentiation
  JOURNAL   PLoS One 10 (5), e0127712 (2015)
   PUBMED   26024229
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000012.1.
            
            On Feb 10, 2021 this sequence version replaced NM_001271309.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            the alternate Celera assembly sequence because the reference genome
            sequence contains a deletion compared to available sequence data.
            The genomic coordinates used for the transcript record were based
            on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643287.28175.1,
                                           SRR26643297.39990.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-210               JAXUCZ010000012.1  39147881-39148090   c
            211-329             JAXUCZ010000012.1  39128754-39128872   c
            330-446             JAXUCZ010000012.1  39127102-39127218   c
            447-506             JAXUCZ010000012.1  39123336-39123395   c
            507-602             JAXUCZ010000012.1  39122657-39122752   c
            603-692             JAXUCZ010000012.1  39120246-39120335   c
            693-758             JAXUCZ010000012.1  39111621-39111686   c
            759-820             JAXUCZ010000012.1  39111189-39111250   c
            821-913             JAXUCZ010000012.1  39110364-39110456   c
            914-978             JAXUCZ010000012.1  39109943-39110007   c
            979-1047            JAXUCZ010000012.1  39109420-39109488   c
            1048-1807           JAXUCZ010000012.1  39108280-39109039   c
FEATURES             Location/Qualifiers
     source          1..1807
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q16"
     gene            1..1807
                     /gene="Tmem120b"
                     /note="transmembrane protein 120B"
                     /db_xref="GeneID:690137"
                     /db_xref="RGD:1584031"
     exon            1..210
                     /gene="Tmem120b"
                     /inference="alignment:Splign:2.1.0"
     CDS             142..1161
                     /gene="Tmem120b"
                     /codon_start=1
                     /product="transmembrane protein 120B"
                     /protein_id="NP_001258238.1"
                     /db_xref="GeneID:690137"
                     /db_xref="RGD:1584031"
                     /translation="MSGQLERCEREWHELEGEFQELQETHRIYKQKLEELTALQTQCS
                     ISISKQKRHLKDLKYALQRYKCHSSQEEAELVQQLAANIKERQNVFFDMEAYLPKKNG
                     LYLNLVLGNVDVTLLSNQAKFAYKDEYEKFKLYLTIILLLGAVACRFVLHYRVTDEVF
                     NFLLVWYYCTLTIRESILISNGSRIKGWWVSHHYVSSFLSGVMLTWPNGLIYQKFRNQ
                     FLAFSIFQSCVQFLQYYYQRGCLYRLRALGERNHLDLTVEGFQSWMWRGLTFLLPFLF
                     CGHFWQLYNAVTLFELSSHEECKEWQVFVLALTFLILFLGNFLTTLKVVHAKLQKNRN
                     KTKQP"
     exon            211..329
                     /gene="Tmem120b"
                     /inference="alignment:Splign:2.1.0"
     exon            330..446
                     /gene="Tmem120b"
                     /inference="alignment:Splign:2.1.0"
     exon            447..506
                     /gene="Tmem120b"
                     /inference="alignment:Splign:2.1.0"
     exon            507..602
                     /gene="Tmem120b"
                     /inference="alignment:Splign:2.1.0"
     exon            603..692
                     /gene="Tmem120b"
                     /inference="alignment:Splign:2.1.0"
     exon            693..758
                     /gene="Tmem120b"
                     /inference="alignment:Splign:2.1.0"
     exon            759..820
                     /gene="Tmem120b"
                     /inference="alignment:Splign:2.1.0"
     exon            821..913
                     /gene="Tmem120b"
                     /inference="alignment:Splign:2.1.0"
     exon            914..978
                     /gene="Tmem120b"
                     /inference="alignment:Splign:2.1.0"
     exon            979..1047
                     /gene="Tmem120b"
                     /inference="alignment:Splign:2.1.0"
     exon            1048..1807
                     /gene="Tmem120b"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gacgtcaggt gcgcgcgtgg ctccggctgc gcaggaacag ctggtgcctc gggaggcggc
       61 tagtgagcgg gcgggcgtgg gctgctggtg gccggacggg gccacgctgc gggagccgcc
      121 gccgccttgc accattgcac catgtccggt cagctggagc gttgcgagcg cgagtggcat
      181 gagctggagg gagaatttca ggagctgcag gagacacaca gaatctacaa gcagaagctg
      241 gaggagctga cggccctgca gacacagtgc agcatttcca tcagcaagca gaagaggcac
      301 ctcaaggacc tgaagtacgc actccagagg tacaagtgcc attccagcca ggaggaggcg
      361 gagctcgtcc agcagttggc cgccaacatt aaggagcggc agaatgtctt ctttgacatg
      421 gaggcctacc tgccgaagaa gaatgggctc tacctgaatc tggttcttgg caacgtggac
      481 gtgaccctcc ttagcaacca ggccaagttt gcttacaagg acgagtatga gaagtttaag
      541 ctctacctga ccataatcct gcttctgggc gctgtggcat gccgctttgt ccttcactac
      601 agggtgacag acgaagtctt caacttcctg ctcgtgtggt attactgcac cctgaccatt
      661 cgggagagca tcctcatcag caacggttcc agaatcaagg gctggtgggt gtctcatcat
      721 tatgtctcct cgtttctgtc tggagtgatg ttgacttggc ctaatggact aatttatcag
      781 aagtttcgaa atcagttttt agcgttctcc atttttcaga gctgcgttca gttcctacag
      841 tactattacc agaggggctg tctctacagg ctgcgggccc tgggggagcg gaaccacctg
      901 gacctcacag tggaagggtt ccagtcctgg atgtggcggg gcctcacctt cctcctgcct
      961 ttcctcttct gcggccactt ctggcagctc tacaatgccg tcacgttgtt tgagctctcc
     1021 agccatgagg aatgcaaaga atggcaggta tttgtgctgg ctctcacctt cctcatcctc
     1081 ttcctcggca atttcctgac cacactaaaa gtcgtgcatg ccaaactcca gaagaacaga
     1141 aacaagacaa agcagccatg agcctccgga ctctcgtgcc tgggggttct tgggacttaa
     1201 gactgctggg gattccagtc agcaccctgg ctgccagtca ccggtagccg tgggcagcag
     1261 catctcaggg gccagcagca gcagctctgg gagcagggcc aaggccctgg tcccggacag
     1321 acatgaggaa tgtgaaggcc gcctgtgcgc acagtattaa cctgccccag ctccatattt
     1381 ataacatatt taataccggg tctttcctgc ctccctggaa tccgggagcc ttacccagag
     1441 ctctgtgtaa cggcagtggg caggtccacc tgtctgtctt ccagggaggg gcagaaagcc
     1501 tcagggaacc cctctctccc tgtccctatc atttgaatcc ctcactgggg tttagatgtg
     1561 cctcactggg gttggcttta gctgacctgc tacttactgt gtcccaggca cctggtggaa
     1621 tgaaactttc agcatccagt ggagccgccc tgccctgggc cgccacctct gctgtaagct
     1681 tcccacagcc ccaccctccg tggtggggaa atatttaagt tctcagagaa cctacctgtc
     1741 ttgtctcttg ccttgtgtct cctgaaccgc ctgcccactc ggggaagcag cctccttagg
     1801 acctcga
//
