LOCUS       NM_001271239            2781 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus transmembrane protein 117 (Tmem117), mRNA.
ACCESSION   NM_001271239 XM_001058576
VERSION     NM_001271239.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2781)
  AUTHORS   Tamaki,T., Kamatsuka,K., Sato,T., Morooka,S., Otsuka,K., Hattori,M.
            and Sugiyama,T.
  TITLE     A novel transmembrane protein defines the endoplasmic reticulum
            stress-induced cell death pathway
  JOURNAL   Biochem Biophys Res Commun 486 (1), 149-155 (2017)
   PUBMED   28285135
REFERENCE   2  (bases 1 to 2781)
  AUTHORS   Burgi,J., Xue,B., Uversky,V.N. and van der Goot,F.G.
  TITLE     Intrinsic Disorder in Transmembrane Proteins: Roles in Signaling
            and Topology Prediction
  JOURNAL   PLoS One 11 (7), e0158594 (2016)
   PUBMED   27391701
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Sep 8, 2012 this sequence version replaced XM_001058576.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.2496729.1,
                                           SRR26360176.1315002.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-118               JAXUCZ010000007.1  127636862-127636979
            119-421             JAXUCZ010000007.1  127645280-127645582
            422-554             JAXUCZ010000007.1  127724745-127724877
            555-654             JAXUCZ010000007.1  127881785-127881884
            655-752             JAXUCZ010000007.1  127938092-127938189
            753-912             JAXUCZ010000007.1  128012832-128012991
            913-1042            JAXUCZ010000007.1  128076824-128076953
            1043-2781           JAXUCZ010000007.1  128097204-128098942
FEATURES             Location/Qualifiers
     source          1..2781
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q35"
     gene            1..2781
                     /gene="Tmem117"
                     /gene_synonym="RGD1562562"
                     /note="transmembrane protein 117"
                     /db_xref="GeneID:500921"
                     /db_xref="RGD:1562562"
     exon            1..118
                     /gene="Tmem117"
                     /gene_synonym="RGD1562562"
                     /inference="alignment:Splign:2.1.0"
     exon            119..421
                     /gene="Tmem117"
                     /gene_synonym="RGD1562562"
                     /inference="alignment:Splign:2.1.0"
     CDS             145..1689
                     /gene="Tmem117"
                     /gene_synonym="RGD1562562"
                     /codon_start=1
                     /product="transmembrane protein 117"
                     /protein_id="NP_001258168.1"
                     /db_xref="GeneID:500921"
                     /db_xref="RGD:1562562"
                     /translation="MGKDFRYYFQHPWSRMIVAYLVIFFNFLIFAEDPVSHSQTEANV
                     IVVGNCFSFVTNKYPRGVGWRILKVLLWLLAILIGLIAGKFLFHQRLFGQLLRLKMFR
                     EDHGSWMTMFFSTILFLFIFSHIYNTVLLMDGNMGAYLITDYMGIRNESFMKLAAVGT
                     WMGDFVTAWMVTDMMLQDKPYPDWGKSARAFWKKGNVRIILFWTVLFTLTSVVVLVIT
                     TDWISWDKLNRGFLPSDEVSRAFLASFILVFDLLIVMQDWEFPHFMGDVDVNLPGLHT
                     PHMQFKIPFFQKIFKEEYRIHITGKWFNYGIIFLVLILDLNMWKNQIFYKPHEYGQYI
                     GPGQKIYTVKDSESLKDLNRTKLSWEWRSNHTNPHTNKTYVEGDMFLHSRFTGASLDV
                     KCLAFVPSLIAFVWFGFFIWFFGRFLKNEQGMENQDKTYTRMKRKSPSEHSKDMGITR
                     ESTQVSVEDPLNDPPLVCIRSDFNEIVYKSSHLTSENLSLHLKESTSAAEADQDPAAS
                     PSLRTD"
     exon            422..554
                     /gene="Tmem117"
                     /gene_synonym="RGD1562562"
                     /inference="alignment:Splign:2.1.0"
     exon            555..654
                     /gene="Tmem117"
                     /gene_synonym="RGD1562562"
                     /inference="alignment:Splign:2.1.0"
     exon            655..752
                     /gene="Tmem117"
                     /gene_synonym="RGD1562562"
                     /inference="alignment:Splign:2.1.0"
     exon            753..912
                     /gene="Tmem117"
                     /gene_synonym="RGD1562562"
                     /inference="alignment:Splign:2.1.0"
     exon            913..1042
                     /gene="Tmem117"
                     /gene_synonym="RGD1562562"
                     /inference="alignment:Splign:2.1.0"
     exon            1043..2781
                     /gene="Tmem117"
                     /gene_synonym="RGD1562562"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggccggcgta ggcggcggcg tgggccgcgg tatttatagc cgggtgacag cagcgcgccg
       61 cggcccgtgt cgccgctcgt cctgcgtccg tcgcggtggc tgagccgcgc gccctccggt
      121 cgaacagcac cgaaggcttg aaggatgggt aaagacttcc gttactattt ccagcatcct
      181 tggtctcgca tgatcgtggc ttacctggtc atcttcttta acttcttgat attcgcggag
      241 gacccagtct ctcacagcca aacagaagcc aatgttattg ttgttggaaa ctgtttttcg
      301 ttcgtaacaa ataaataccc tagaggagtt ggctggagga ttttgaaggt gcttctatgg
      361 ctactggcca ttctcatagg actgattgct ggcaagtttc tgttccatca gcgtttattt
      421 ggtcagttgc tccggttaaa aatgttccgt gaagaccacg ggtcgtggat gacgatgttc
      481 ttcagcacga ttctgtttct cttcatcttc tctcacatat acaacacagt ccttctgatg
      541 gacgggaaca tgggagcata tctcatcaca gactacatgg gcatccggaa tgaaagtttc
      601 atgaaactag ctgctgtagg aacctggatg ggggacttcg tcacagcctg gatggtcacc
      661 gatatgatgc ttcaggacaa gccctaccct gactggggga agtctgcaag agctttctgg
      721 aagaaaggca acgtgcggat cattttgttc tggactgtcc tcttcaccct gacctccgtg
      781 gtggtacttg tcatcacaac cgactggatc agctgggaca aactgaaccg tggatttttg
      841 cccagtgatg aggtttccag ggccttcctc gcttctttca tcttggtctt tgacctcctt
      901 atcgtgatgc aggactggga attcccacac ttcatgggcg atgttgacgt gaacctcccc
      961 gggttgcaca ctcctcacat gcagttcaag attcccttct tccagaagat cttcaaggag
     1021 gaataccgca ttcacataac aggtaaatgg tttaactacg gaatcatctt cctcgtcttg
     1081 attttggacc tgaacatgtg gaagaaccaa atattttaca aacctcatga atatggacag
     1141 tatattggcc cagggcagaa gatatacaca gtgaaggact ctgaaagttt aaaggattta
     1201 aacagaacca agctatcctg ggaatggcgg tccaatcaca ctaatcctca cactaacaaa
     1261 acctatgttg aaggcgacat gttcttacac agcaggttca caggggccag cctagatgtc
     1321 aagtgtctgg cttttgttcc aagtctgata gctttcgtgt ggtttggatt ctttatttgg
     1381 ttctttggac ggtttctaaa gaacgagcaa gggatggaga atcaagataa aacttacact
     1441 cgcatgaaaa gaaaatcacc ctcggaacac agcaaagaca tgggcatcac tcgagaaagc
     1501 acccaggtct ccgtggaaga cccgctgaac gacccgccct tggtttgcat caggtccgac
     1561 tttaacgaga tagtctacaa gtcctcccat ctgacatcgg aaaacttgag cctgcatctg
     1621 aaggagtcta ccagtgcggc ggaggccgat caagacccag cggcctctcc gagtctgcgg
     1681 acggactaga gtctcttccg tagagatagc acgaagagca gccttgagtg taacttcaaa
     1741 gtcgtagtct ttcgttttgt aaatgtcagg tttacatagc gttaggtaaa agaaacacaa
     1801 acgccacaac ggtgctcaac atgctttttc tagactcatt gttttctatc tgtattatga
     1861 tacacgtgcc tctcgtatgt ttaatggtcc tctagagatc gcttctcaca actgcacaag
     1921 ctattactga ctttacagca aggtagatta gccgattacc cacgtatctg atgttcaacc
     1981 atagtggtgc cttgagacat taaactgttt aactatacca gacatgaagt gtagaatggt
     2041 tctccagtct tatttcacat gggattcttt tttttttttt tatacaatta ttttgattta
     2101 cacttgatgt ctgagcagga aacagacatg gctgatttgc ggatggagaa agttctcttg
     2161 gttcactgtt cagcagcgaa gtcggtgact ttgacactgg agtgcagagg agcacagtga
     2221 ttgcctttta aattttactg gctagcttcc gaatctaaat acagatgtaa aatccaatga
     2281 gaggagggct gcaatgcacc atgggtcatt gctcacgaaa tgtgactttc tccaaccact
     2341 aattgcaatt agatgataat acctaattat gttttcctaa ttaaagataa attgctacct
     2401 gattaatagt cttgcccttt tcctttggga acaaaggtta agaggaacag ttgggtgagc
     2461 tctcaaattt attggcattt ccacaatgtc ctagacaacc aaggagttga agctgtaatc
     2521 atgtgaacgg aggctgcaca gcccactgtc tacaatattg tacattttgc tatcaatatg
     2581 gttctggaca atggacagaa aaaaacggat ggcactgttg accaagggaa ttctgaaatc
     2641 attcaccgaa acctcacgcg gtagaaaatg ccgtacaaga gtctctttaa cgtcttctgt
     2701 gtatgtgtgt agtttttgtt tgggtttcat ttttttaaag atgtaaacat cgcaccttaa
     2761 taaataagaa ttatatgcag g
//
