LOCUS       NM_001159625            1357 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus transmembrane protein 116 (Tmem116), mRNA.
ACCESSION   NM_001159625 XM_001074467 XM_001074495 XM_001076096 XM_001076125
            XM_001076148
VERSION     NM_001159625.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1357)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1357)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC167104.1.
            
            On or before Apr 26, 2009 this sequence version replaced
            XM_001076125.1, XM_001076096.1, XM_001076148.1, XM_001074467.1,
            XM_001074495.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC167104.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132276,
                                           SAMD00132286 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1357              BC167104.1         1-1357
FEATURES             Location/Qualifiers
     source          1..1357
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q16"
     gene            1..1357
                     /gene="Tmem116"
                     /note="transmembrane protein 116"
                     /db_xref="GeneID:690442"
                     /db_xref="RGD:1596066"
     exon            1..29
                     /gene="Tmem116"
                     /inference="alignment:Splign:2.1.0"
     CDS             12..1058
                     /gene="Tmem116"
                     /codon_start=1
                     /product="transmembrane protein 116"
                     /protein_id="NP_001153097.1"
                     /db_xref="GeneID:690442"
                     /db_xref="RGD:1596066"
                     /translation="MALPLELFPAIQWIQFAVATLSVIGSSSLITYIVFQNPQKSAEV
                     KSLLYLSFSDLLLGICWLIKALVYGTAAAHKDSICYNLQTAGEIFYLASLVFTVSYIW
                     CLYAELRRKHSPSEQSTAAQVTDYACQGGCVMFLLSSLTPLLLMTPVFFLGNVNECFH
                     NFSQNHRCMLMHSEPLPSTNTSVCSTLYLYGVTVFLASFFFSLLTIVVLLVLAQTLYK
                     KFVKSMGLLESEQWAVIHTVGQRVRFFPAAFVCCWGPAVTLLIMKLTKPQETSLHVAL
                     SVLQALTAASQGLLNCGIYGWTQCKFQQIKREPPRDADTQTPLLCSQKRVYSRSPSAS
                     RPPLAFASSSSTVL"
     exon            30..76
                     /gene="Tmem116"
                     /inference="alignment:Splign:2.1.0"
     exon            77..140
                     /gene="Tmem116"
                     /inference="alignment:Splign:2.1.0"
     exon            141..272
                     /gene="Tmem116"
                     /inference="alignment:Splign:2.1.0"
     exon            273..377
                     /gene="Tmem116"
                     /inference="alignment:Splign:2.1.0"
     exon            378..427
                     /gene="Tmem116"
                     /inference="alignment:Splign:2.1.0"
     exon            428..511
                     /gene="Tmem116"
                     /inference="alignment:Splign:2.1.0"
     exon            512..632
                     /gene="Tmem116"
                     /inference="alignment:Splign:2.1.0"
     exon            633..777
                     /gene="Tmem116"
                     /inference="alignment:Splign:2.1.0"
     exon            778..851
                     /gene="Tmem116"
                     /inference="alignment:Splign:2.1.0"
     exon            852..1330
                     /gene="Tmem116"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctgaagtctg catggccctc ccactggagc tttttcctgc gatacagtgg atacagtttg
       61 ccgtggctac tctgagtgtt ataggttcca gttcacttat cacctacatc gtgttccaga
      121 acccacagaa gtctgcagag gtaaagtcac tcttgtatct gagcttctct gacctgctcc
      181 tgggaatttg ctggctcata aaggcacttg tctatggaac cgcagcagcc cacaaggaca
      241 gcatctgcta taacctacag actgcaggag agattttcta cctggcctca ctcgtcttca
      301 ccgtcagtta catctggtgt ctgtacgcgg agctgaggag gaagcacagc ccgagcgagc
      361 agagcacagc tgcgcaggtg acagattacg cttgccaagg tggttgtgta atgttccttt
      421 tgtcaagcct gacacctctg ctgttgatga cgcctgtgtt ctttctgggc aacgtcaatg
      481 aatgtttcca caacttcagc cagaaccaca ggtgtatgct aatgcactct gagccactgc
      541 cctccaccaa cacgtctgtc tgcagcacac tctatcttta tggtgtcacc gttttcctgg
      601 ccagcttttt cttcagcctc ctcaccattg tggtcttact cgtcctcgcc cagacgttat
      661 ataagaagtt tgtgaaatcc atgggccttc tggagagcga gcagtgggca gtgatccaca
      721 cggtgggtca gcgagtgcgt tttttcccag cggcctttgt gtgctgctgg ggcccagctg
      781 tcacactgct gatcatgaag ctgaccaagc cgcaggagac ctccctgcac gtggccctct
      841 ctgtgctcca ggctcttaca gcagcatccc aggggctgct caactgtggc atttatggct
      901 ggacacagtg caagttccag cagataaagc gcgagcctcc ccgtgacgca gacactcaga
      961 ccccactgct gtgctcacag aagagagttt atagcaggag cccgagcgca tcgaggcctc
     1021 ctcttgcctt tgcttccagc tcttccaccg ttctttgagc ctctggactg caccgtcagg
     1081 gagtgaatgt gtcccaggag tggactctct gctggccaca ccccagactg atggccacac
     1141 cccagactga agagctgaaa ggaaatgtag ggccatggcc agtagcaatt gtgggcgaat
     1201 tcggaaggaa ctctccaact gctcgttcag ggagatatag ccgctttcta tctaagagac
     1261 tcattacttt aacaagtact agacttattt acatctcttg aagaaaaaat aaatgtcagg
     1321 ttcatatgta aaaaaaaaaa aaaaaaaaaa aaaaaaa
//
