LOCUS       XM_039082603            4236 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transmembrane protein 108 (Tmem108),
            transcript variant X14, mRNA.
ACCESSION   XM_039082603
VERSION     XM_039082603.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039082603.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4236
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4236
                     /gene="Tmem108"
                     /gene_synonym="RGD1311530"
                     /note="transmembrane protein 108; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 12
                     ESTs, 6 long SRA reads, 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 34 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:300967"
                     /db_xref="RGD:1311530"
     CDS             792..2519
                     /gene="Tmem108"
                     /gene_synonym="RGD1311530"
                     /codon_start=1
                     /product="transmembrane protein 108 isoform X3"
                     /protein_id="XP_038938531.1"
                     /db_xref="GeneID:300967"
                     /db_xref="RGD:1311530"
                     /translation="MKRSLQALYCQLLSFLLTLALTKALVLAVQGPSPRESLQTLPSG
                     SPPGTMVTATHSPTRLSSVMTLSPKPDGRSSQAAATMETTVSHPEGHPPTDTVSTVMV
                     TAAVPHPESPLPTGSPPAAMATTSSHSESRPPGDDAPAATTLPTKPAGTTTRPTVSPR
                     VPTRRPPRPPGSSRKGTGGSSRTFPLVPGGHSARKESQRGRNQSSTHLGPKRPLGKIF
                     QIYKGNFTGSVEPDPSALTPRTPLGGYFSSTQPQTVSPATGPRSTSWVPPTTSLVPAT
                     DKPDLTRANQGSGPTFTSPGGEPDATAASGAPDSTQPAPVPSRSPHGDVQDSSSHSDS
                     WLAVTPDTDRPTSASSRVFTAATGPTQAAFDASVSAPPPGIPQGPSATPPAPAWPSGV
                     SESIVSPAKEEAEASPTTTDRGPRPLSTVPSTATGNFLNRLVPAGTWKPGTVANISHV
                     AEGDKPQHRATICLSKMDIAWVILAISVPISSCSVLLTVCCMRRKKKTANPENNLSYW
                     NNAITMDYFNRHAVELPREIQSLETSEDQLSEPRSPANGDYRDTGMVLVNPFCQETLF
                     VGNDQVSEI"
ORIGIN      
        1 ctctctcttt taaatccaga gctcttgcat ttggctggct tggcttgcca gcaagcccca
       61 agcatccccc tgcctcagac tccccattgc tgtgtgtgtg ctaccctgac tggcttttta
      121 atgtgagtcc tagagagcaa actcaggtcc gcttcaccac cgaaccatct cccagcccct
      181 aaacctgctt ttctgaatgg agtcagcttt agatattctg actcttttgt gaagctaaga
      241 atgaggatga tctggagttc tataagaacc ctggagctac ctggggtcct cagcatagaa
      301 ttgtcgatgt tcaacacatt gccttgagcc tgcgaatatc ttcttacctt gggacaagag
      361 caaggttcca ggttggccaa caccattgtg ctctctaggc cagtgcccgg tgaggcctgt
      421 gtgatagccc tccttttcac agctaaccaa gcagctccta agggtgtgtt aaaagataag
      481 aggggaagga agccaatccc catgcaaagg gctgcagcag gctagtagtt gctaggcaag
      541 agaaagtaat tcagagtcct tgccaagtgc ctgccttgca aacagggaaa cttccatgga
      601 agggagtgag gtgggggtgc ttgctggttg ccataggaat gtctccatga ttggaaccag
      661 accacagagt ggggagaaca agccggcagc acccatggtt ctttcagctt gggaatggaa
      721 gcacacggtg ggcggtggag ccaaggcaga atcatgaata aactggagga caagcaggac
      781 cagatgatac catgaagaga agtttacagg ccctctattg ccaactgtta agctttctcc
      841 taaccttggc actgaccaaa gcactggtac tcgccgtcca gggaccatct cccagggaat
      901 ctctgcagac cctcccctca ggcagccccc caggcaccat ggtgacagca actcacagcc
      961 ctaccagact ctcctctgtg atgaccctga gccctaaacc tgatggccgc tcatcacagg
     1021 ctgcagctac tatggaaacg acagtatctc atccagaagg gcaccctccc acagacactg
     1081 tgtccacagt gatggtgaca gctgccgtcc cccatcctga aagccctctg cccacaggtt
     1141 cccctccagc tgccatggca accacatcgt cccactcaga gagccgcccc ccaggggatg
     1201 atgcccctgc cgccaccacc ctgccaacaa agccagcagg aaccaccacc cgccccacag
     1261 tgtccccacg ggtcccaact cgtaggcccc ccaggccccc aggctcttcc aggaagggga
     1321 ctggtggctc gtctcgcact ttcccacttg tacccggtgg ccactcagca aggaaggaaa
     1381 gccagagggg acgaaatcag agctcaacac atctggggcc gaagcgtcct ctggggaaga
     1441 tattccaaat ctacaaaggt aactttacgg ggtctgtgga gccagacccc tctgctctca
     1501 ctcccaggac cccactcggg ggctacttct cttcgacaca gcctcagaca gtatctccag
     1561 ctacaggacc cagaagcacc tcgtgggtgc cccccacaac ttccctggta cctgcaacgg
     1621 acaagccaga ccttaccaga gccaaccagg ggagtggccc cacatttacc agcccaggag
     1681 gggagccaga tgccacagca gcttcaggtg cccctgacag tacacagccc gccccagtgc
     1741 cttctcggag ccctcatggt gacgtgcaag acagctccag ccacagtgac tcttggcttg
     1801 ctgtcacccc tgacactgac agacccacgt ctgccagctc cagggtcttc acggctgcca
     1861 cggggcccac ccaggctgcc ttcgatgcca gtgtctcagc ccctcccccg ggcatccctc
     1921 agggaccatc tgcaacccct ccggccccag cctggccctc tggggtctca gaaagtattg
     1981 tttctccagc aaaggaagag gctgaggcct cccccacaac caccgacagg gggcccagac
     2041 cgctttccac agtgccgtct acagccacgg gcaacttcct caaccgcctg gtccccgcgg
     2101 ggacctggaa gccgggaact gtggccaaca tctcccatgt ggctgaaggg gacaagcccc
     2161 agcacagagc caccatctgc ctgagcaaga tggatattgc ctgggtcatc ttggccatca
     2221 gtgtgcccat ctcttcctgc tccgtcctgt tgacagtgtg ctgtatgaga aggaagaaga
     2281 agacagccaa ccctgagaac aacctgagct actggaacaa cgccatcacc atggactact
     2341 tcaacagaca tgccgtggag ctcccgaggg agatccagtc cctagagacc tcagaggacc
     2401 agctctcaga gccccgctcc ccagccaatg gcgactaccg agacactggg atggtcctcg
     2461 tgaacccctt ctgccaggaa acactgttcg tgggaaacga ccaagtttct gagatctaga
     2521 tgcagcagcc tccgctttgc cactccctat ttttgtccct aaattataaa tatacaaata
     2581 tatatattat aaatataacc tttgtgtaac cccgacttaa taagagacat tttcagcttt
     2641 ttttcttaag aattgtcaac atctttttta caagtgtggt ttaaaaaaaa aatttacaga
     2701 acgaccccat ggctttataa aataaaggta tttctaagca aagcggctgc accaattgct
     2761 tctcttaact gatctgggca tggagaggtt ccaggagccc tgggcaggtg aggaaagaga
     2821 ccagtctccc tcggaagctg aacgttagtg tggccaaatg agtggccatc tgtgtggtct
     2881 tggtgctctg gttcccttga ctcagtgtgc ccacctgccc tgtctttttg tattttttcc
     2941 cctagtggtg ggaactgggg caccagggca gaagactcag gcaagtatac aaaactgtct
     3001 tgtcagcctg gagcctcact ctaccgtcac tgaatgtcag tgaaagccat caggaggccc
     3061 cggccccctt ttctgacccc acagatgttc ccaccatgct agaagaaaca ggactgctgc
     3121 ctttgtctgg cagaaaagtg gtccctagaa acccttctca gcatcccttc cagcaccaca
     3181 cctgcctcgg accccatgct tcctcccttc ctagaggaca gacgcacatc tcagcctagg
     3241 ggctgtgcag ctcctacttg cccttccctg tccaggggtc cggtgtttgt tgggattctc
     3301 tactgctttc tccaaaggca atgatcttgt gcccctgaga aacaggttta tctagaaagc
     3361 cttgtggtgt agaactattt tttttaacct ccccccatta aatctttaaa gaaagagatt
     3421 gccaaatgaa tcacttgaaa gaagtgccac tctgtctcca ggcagaagca cggcagacct
     3481 gcccacaaac tcgccatgcc atcctctttc actgtcccct gcctcccctt ctcttgttcc
     3541 cctgggtcca ggtccagctg ccatcccagc ccacactgta cccagtttga ccaacaagga
     3601 acagactctc agaaccccaa gaggggcttt ctgggtccaa tcgcttttct ctgttacttt
     3661 cctaacccac catggctagg gatttaactt caacccctct ccccttctct aaaagaaaaa
     3721 tagtttgata gtatattttg aatatagatg ttcttattat cagattggag cttgaatttg
     3781 actgttgatt cgatgtctgt gttgttgctg tggtcttctt tatcataact gcctcttttc
     3841 ttccatcccc ccgttccaaa agaacgacgg ccttcaaaac tcatgtgtgt tctcaatgtt
     3901 ctatggacct acctaacacg agtctgcttg tctctcttca aagacttcaa cccacaaaga
     3961 agcaggttaa atgttgtgcc gagatcttgc tctctaccat gttgctgtct gaccttaacc
     4021 ttatcatgat atttctgtta gctactgcat tgaatatgcc aatgtgtgtg agtatgtatt
     4081 gagaaaaaca tgtttgtaaa gtaaaattta tatataatat atgtcatcac agatacatat
     4141 gttatatata tacatttgtg gatgtatgac ttattttccg tatccacaga attcagctac
     4201 catgtatata taaataaact tattttatta cccaga
//
