LOCUS       NM_001008358            1425 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Rattus norvegicus transmembrane protein 106C (Tmem106c), mRNA.
ACCESSION   NM_001008358 XM_235617
VERSION     NM_001008358.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1425)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   2  (bases 1 to 1425)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC086606.1.
            
            On Dec 16, 2004 this sequence version replaced XM_235617.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC086606.1, DY316426.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1425
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q36"
     gene            1..1425
                     /gene="Tmem106c"
                     /gene_synonym="RGD1311532"
                     /note="transmembrane protein 106C"
                     /db_xref="GeneID:315286"
                     /db_xref="RGD:1311532"
     exon            1..75
                     /gene="Tmem106c"
                     /gene_synonym="RGD1311532"
                     /inference="alignment:Splign:2.1.0"
     exon            76..266
                     /gene="Tmem106c"
                     /gene_synonym="RGD1311532"
                     /inference="alignment:Splign:2.1.0"
     CDS             86..868
                     /gene="Tmem106c"
                     /gene_synonym="RGD1311532"
                     /codon_start=1
                     /product="transmembrane protein 106C"
                     /protein_id="NP_001008359.1"
                     /db_xref="GeneID:315286"
                     /db_xref="RGD:1311532"
                     /translation="MGSQHSSALTFCQRKKDDNPEDLLAERDQEEAIAQFPYVEFTGR
                     NSITCHTCQGAGYIPEEQVNKLVALIPHSDQRLRPQRTKQYVLLSVLLCLLASGLVFF
                     FLFPHSVLVDDNGIRVSNVTFNKQDSLVVLDVTATLKIRNSNFYPVAVTNLFSQVQYM
                     KAVVGSYTAANVSLIPPRSEHLVNFTVKAEVGGPSSYVYFYCTLPAILVHNIVIFMRT
                     SVQISYIGHTSQSTLEAQHNVDCGENSTAVQSLLLVPWGPHL"
     exon            267..330
                     /gene="Tmem106c"
                     /gene_synonym="RGD1311532"
                     /inference="alignment:Splign:2.1.0"
     exon            331..490
                     /gene="Tmem106c"
                     /gene_synonym="RGD1311532"
                     /inference="alignment:Splign:2.1.0"
     exon            491..631
                     /gene="Tmem106c"
                     /gene_synonym="RGD1311532"
                     /inference="alignment:Splign:2.1.0"
     exon            632..681
                     /gene="Tmem106c"
                     /gene_synonym="RGD1311532"
                     /inference="alignment:Splign:2.1.0"
     exon            682..735
                     /gene="Tmem106c"
                     /gene_synonym="RGD1311532"
                     /inference="alignment:Splign:2.1.0"
     exon            736..1400
                     /gene="Tmem106c"
                     /gene_synonym="RGD1311532"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cggagactcg ctggagcggg caggtggagg gaggagtggt cccgggagta acagccagga
       61 gttggtgcgc cacaggagat gatacatggg gtctcagcac tcctctgccc tcacattttg
      121 tcaacgaaag aaggatgaca atccggagga cttgctggct gaaagagatc aggaggaagc
      181 catcgctcag tttccctatg tggagttcac tgggagaaat agcatcacct gtcacacctg
      241 ccagggagca ggctacatcc cagaagagca agtcaataag ttggtggctt tgatccccca
      301 cagtgaccag aggttgcgtc ctcagagaac gaagcagtac gtcctcctgt cagtcctgct
      361 gtgtctcctg gcatctggcc tggtgttctt ctttctgttt ccgcactcag tcctcgtgga
      421 cgataatggc atcagagtgt cgaacgtcac ttttaataaa caggactccc ttgtggtcct
      481 cgatgtgacg gccaccctga aaatcaggaa ctccaacttt tatcctgtgg ccgtgaccaa
      541 cctgttcagc caggttcagt atatgaaggc cgtggttggc tcatacacgg ctgcgaacgt
      601 ctcgctcatt ccgcctcgga gtgagcacct ggtgaatttt acggtgaagg ctgaggtggg
      661 aggaccgtct tcctatgtgt acttctactg cacacttcct gccatcctgg tacacaacat
      721 tgtgatcttc atgaggactt ctgtgcagat ttcatacatt ggccacacat cccagagcac
      781 cctggaggcg cagcacaacg tggattgtgg ggagaattcc acagccgttc agagcctgct
      841 cttagttccc tgggggccac acctatagaa ggaagcctaa catctgtccc tgtggctggc
      901 ccagcgcatc ttcccgtgca cctggtgttt ttctcttgga accaacaaaa ccactgccca
      961 gtgcctcgtc tgtgcctagt gtatagttag tgctcaacct caggctgaag aaccggattc
     1021 ctatattctg gctgctcttg agtcattata agttgagatg aaccagggtt ctaggttttt
     1081 agacccgagt aacacgaagg taggatgctc gtgcagctgc aaactcggtg tgagaagcac
     1141 cagcagggca gggtgtccag gacacccgtg aagagccctg ctcagtggct gcctttgcat
     1201 ctgctgccta atacccaccc ccacctccca cccccttctc ctcccaggtt ttcagaaagg
     1261 ttttggcatt tcttttcctt cccatacaga gtgactagtt ttcccccaag ggtctactga
     1321 agggcttgac ggacctttga tccactggct ggatattgga ttgggaattt gatagaggaa
     1381 taaaccctgc ttttggttga aaaaaaaaaa aaaaaaaaaa aaaaa
//
