LOCUS       NM_001024967            2403 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Rattus norvegicus transmembrane protein 106A (Tmem106a), mRNA.
ACCESSION   NM_001024967 XM_213459
VERSION     NM_001024967.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2403)
  AUTHORS   Dai,H., Xu,D., Su,J., Jang,J. and Chen,Y.
  TITLE     Transmembrane protein 106a activates mouse peritoneal macrophages
            via the MAPK and NF-kappaB signaling pathways
  JOURNAL   Sci Rep 5, 12461 (2015)
   PUBMED   26215746
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC091170.1.
            
            On Jun 25, 2005 this sequence version replaced XM_213459.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC091170.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132271, SAMD00132291
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2403
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q31"
     gene            1..2403
                     /gene="Tmem106a"
                     /gene_synonym="RGD1309043"
                     /note="transmembrane protein 106A"
                     /db_xref="GeneID:287722"
                     /db_xref="RGD:1309043"
     exon            1..287
                     /gene="Tmem106a"
                     /gene_synonym="RGD1309043"
                     /inference="alignment:Splign:2.1.0"
     exon            288..514
                     /gene="Tmem106a"
                     /gene_synonym="RGD1309043"
                     /inference="alignment:Splign:2.1.0"
     CDS             307..1092
                     /gene="Tmem106a"
                     /gene_synonym="RGD1309043"
                     /codon_start=1
                     /product="transmembrane protein 106A"
                     /protein_id="NP_001020138.1"
                     /db_xref="GeneID:287722"
                     /db_xref="RGD:1309043"
                     /translation="MGKAFSQLTSQKDEDKSILPDNPAMASKAANYFSTGNRKPSHSC
                     VPCEKAASTSFVTCPTCQGNGEIPQELEKQLVALIPYGDQRLKPRRTKLSVFLAVTIC
                     LLIFSLTIFFLYPRNIVVHPVGLNSSTVAFDETHVQLNMTNVLNITNSNFYPVTVTQL
                     TAEVLHQTSVVGQVTSSLRLHIGPLASKQMPYEVASRILDENTYKICTWPKIRVHHIL
                     VNIQGALTCSYLTHPQQLPFESFEYVDCRENMSMPHLELPRPA"
     exon            515..578
                     /gene="Tmem106a"
                     /gene_synonym="RGD1309043"
                     /inference="alignment:Splign:2.1.0"
     exon            579..732
                     /gene="Tmem106a"
                     /gene_synonym="RGD1309043"
                     /inference="alignment:Splign:2.1.0"
     exon            733..873
                     /gene="Tmem106a"
                     /gene_synonym="RGD1309043"
                     /inference="alignment:Splign:2.1.0"
     exon            874..917
                     /gene="Tmem106a"
                     /gene_synonym="RGD1309043"
                     /inference="alignment:Splign:2.1.0"
     exon            918..971
                     /gene="Tmem106a"
                     /gene_synonym="RGD1309043"
                     /inference="alignment:Splign:2.1.0"
     exon            972..2376
                     /gene="Tmem106a"
                     /gene_synonym="RGD1309043"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cccaaatttg actaacggcc agtgtggtgg gatttaaatc cttcctccgt gaagtcctac
       61 ctttccttcc ttgcccacca tagcagagtc tcctagtaaa gaggggactt gaccctcccg
      121 gtaggcaaga gtccctactc cctaccttcg gcacattcac tctctcaggt ctctctaaag
      181 ggagctgatg gcctccaccc taccctagag gcccttctcc caaaggagca ttccagaaaa
      241 cccaatcttg ctgccgagaa gagcctggaa tccttgatct aaatcagtga aaaatcccac
      301 tgaactatgg gtaaggcatt ctcccagctc acctctcaga aggatgagga caagtctatc
      361 ctacctgata accccgccat ggccagcaag gctgccaact acttcagcac tggtaacaga
      421 aaaccatcac actcctgtgt gccttgtgaa aaggctgcga gtaccagctt tgtgacttgt
      481 cctacctgcc aaggcaatgg ggagatcccc caagagctag agaagcagct ggtggccctc
      541 atcccttatg gagaccaaag gctgaagccc agacgcacga agctctctgt gttcctggcc
      601 gtgaccatct gcctgctgat tttctccctc accatctttt tcctgtatcc acggaacatt
      661 gttgtgcatc ctgtaggcct caactcctct acagtcgcct tcgatgaaac tcatgtacag
      721 ctcaacatga cgaatgtcct gaacatcacc aacagcaact tctatcccgt cacagtgaca
      781 cagctgacgg ccgaggtgct ccaccagacc tctgtggtag gccaggttac cagcagtctc
      841 cgcctgcaca ttggcccttt agccagtaag cagatgcctt acgaagttgc cagcaggatt
      901 ttggatgaaa acacatacaa aatctgtaca tggccgaaaa tcagagtcca ccatatcctt
      961 gtgaatatcc agggtgctct gacctgctcc tacctgaccc atccacaaca gctacccttc
     1021 gagagcttcg aatatgtgga ctgcagagaa aacatgtcaa tgccccatct ggagctccct
     1081 cgcccagcct gatctgtctg ctgcccttct acaccaggca cctgcaagcg ggtctgcagc
     1141 tccgctccat ggagctctag gaaagtagtg actgtgttga aggaaacgtc ctgcttttgt
     1201 ctgtgccttc ccctaacacc ctcagcgcat ggagctcctg taacaatgtc ctagttcctg
     1261 agtcctcaga tccccaggaa tcacttgtga tgagtgtcat cgtgcagaca ggatgttatg
     1321 tcatcgtggt ttgtgtgtgg aagaatggct aacttgacat tgtcttggga ctgagcatgt
     1381 tggttaccca gctccacccg ggtgggtctt cagttggaat gtagttctag ctacacttca
     1441 caacatggat ggatcttttt caagttttcc tctcagtaat aagtggcttt ccggacatcc
     1501 agtgctgtgt ccgcggtcgt cttaggtgac tataaatgtt ctcctgtgct gttctgcttt
     1561 ggccatttga taatgatggt gatggcctgg ttctctcagt gaaaggtgga cagtatggtc
     1621 ctcatccttc ctggttcagg acactgtccc tggtttctag gaaggcagat tacagcatct
     1681 aaacctctct gtagaacagc tctaatgctg tcttcacagc agaagccaag tagctgaggg
     1741 ggagccatct ggtctacctt agagcaaagg cagagccatt tgaggtagtc tttattaaag
     1801 gaaaatgtct aagcctgtgt gagtggacac aggacaggca gttgagtagg cccaggggct
     1861 ctgttcagaa agcctgaagg acataagcta ttgatatcag gccaacgctg tggggctctc
     1921 gtatattctc tgcaccaggc ccactcggtt cccgaggcct ctgccgtcct ctgggatgtg
     1981 actgtgaaga gtgacagatt caccagattt tttccttcct tgcccgtcac tacactggag
     2041 ccaagccaca ggtaactccc agttttttac tgaaccccag gtagagatgt ctgtgttgtg
     2101 ggagagcaga aacatgtgtt ctctgaagcc atcctttgct ggcgaaaggc cacgtggttg
     2161 gggaagtaag gctgaatttg aagtaaggat gcaaggaaac gatggtgcca gtactgtcca
     2221 actagcctgg ggatacaagg agggagagga agtctgttgt caccgagctt tccctcctgg
     2281 gtagccaggg ttaagatgta ccaacaaaac tgagatcgaa gtgtataaac caacaaatgt
     2341 aaaagatttc taacaataaa ttgttattta gccatgaaaa aaaaaaaaaa aaaaaaaaaa
     2401 aaa
//
