LOCUS       XM_039113336            7027 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transmembrane p24 trafficking protein
            family member 8 (Tmed8), transcript variant X1, mRNA.
ACCESSION   XM_039113336
VERSION     XM_039113336.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039113336.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7027
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7027
                     /gene="Tmed8"
                     /note="transmembrane p24 trafficking protein family member
                     8; Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 13 ESTs, 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 162 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:681943"
                     /db_xref="RGD:1589336"
     CDS             35..1015
                     /gene="Tmed8"
                     /codon_start=1
                     /product="protein TMED8 isoform X1"
                     /protein_id="XP_038969264.1"
                     /db_xref="GeneID:681943"
                     /db_xref="RGD:1589336"
                     /translation="MSDGQAAEGPAFWSPAARRGSAGGVGDRRGVEESQAAASEKEDL
                     ESTKVNSPLASAPDPAAQSSPYRPQMVSPVSKDTTEDLQKAAGASEAQAPGEQASLPA
                     GQTQVLSEMAKYQAPQRPEDTVMIQSEHTGAIDVLSADLESADLLGDHRKVSPPLMAP
                     PCVWTFAKVKEFKSKLGKEKNSRLVVKRGEVVTIRVPTHPEGKRVCWEFATDDYDIGF
                     GVYFDWTPVTSTDITVQVSDSSEDEDEEEEEEEEIEEPVPVGDVERGSRSSLRGRYGE
                     VMPVYRRDSHRDVQAGSHDYPGEGIYLLKFDNSYSLLRNKTLYFHIYYTS"
ORIGIN      
        1 gctagctgcg gagacgctcc ggcgctggct gcagatgtcg gacgggcagg cagctgaggg
       61 gccggctttc tggagccccg cagctcgccg agggtcggcg gggggcgtcg gggacagacg
      121 gggagtggag gagagccagg cagccgcctc agagaaggaa gatctggaaa gcaccaaagt
      181 gaactctccg ctggcttctg cccctgatcc agcagcccag tcctcaccct acaggccaca
      241 gatggtgtct ccagtgagta aggataccac ggaagatcta cagaaagcgg ctggcgcctc
      301 agaggctcag gctccggggg agcaggcgtc actgccagcg ggccagacgc aggtcctcag
      361 tgagatggcc aagtaccaag cgccacagcg acccgaagac acagttatga tccagtctga
      421 gcacactggg gctatagatg tcctttcagc ggatttggaa tctgcagatc ttctgggtga
      481 ccacaggaaa gtctctccac ctctgatggc tcctccatgc gtctggacct ttgccaaagt
      541 gaaggagttc aaaagcaagc tggggaagga gaagaacagc cgtctggtag tgaagcgggg
      601 agaagtagtc accatccggg tccctaccca tcccgaggga aagcgcgtct gctgggaatt
      661 cgcaactgac gactatgata ttggttttgg agtttatttt gactggaccc cggtaaccag
      721 cactgatata actgtgcagg tcagtgactc cagcgaggac gaggatgagg aagaggagga
      781 agaggaagag attgaagaac ccgtccctgt gggagatgtg gagagaggct ccaggagttc
      841 tctgaggggc cgctatgggg aggtcatgcc tgtgtaccgg cgggacagcc accgagatgt
      901 gcaagccggc agccatgact accctgggga gggcatctac ttgctcaagt ttgataactc
      961 gtactccctg cttcgcaaca agactctcta cttccatatc tactacacta gctgaaggat
     1021 gctgggctgg ggcaggctgt gtttgctggc tgaagcaggc tgccagctgg tgcctcttgt
     1081 gtataagcaa gagcctaaag ttgtgtgtgg ggctctgaag cctcgtgccc tgcctggcat
     1141 gcctgactat tgaccccatg tagctttctc ctttcttgcc ttctgcaggt ggtggtgtag
     1201 tgctcctgtt ctgtggtccc tgactcacac tcttgtttcc gactccagca aaattcctct
     1261 cagaaggccc ctccctatga ggcaaaagcc tccaatgaag tagaaggatg tcttttaaga
     1321 aattgactga ctctggtaaa gctcattcag gttgccgctc actcttctcc agagcctgtc
     1381 atgccagtgt actttagtag cgcctactgt ctttacatct cgaggtgcca gaagagggaa
     1441 agcacactgt ctatgaaaga gcccaagagt ttggatggag agtgctctgt ccagcctctc
     1501 accactgcca cactcctgcc tgcctgctgg gtgttcttag tctctgctca ggccgggaga
     1561 cctcactgcc ttgaatggat attattcctg ataaggtaga tccttcctcc tttcttttca
     1621 ccaagtctgt gtttctgtca tgtagcaagt acctccaagc aattgtggtc ggtgtcctca
     1681 gagaagaaaa gcggcctcta tcacttcctg tctccagtta tctcccttac tgagggtgct
     1741 ggtagttgat gaagaaaggg tggaagataa ccactgagtt atctcagacc ctgccctttt
     1801 ggaaatcaag tattagtgcc tcccctcccc catcccattt taggccatgt gtgttgcgta
     1861 caaagtttgc cttggaacca aatacagtga aacccagtca ggtttgcagt ggttctgggt
     1921 ttgtgttttt atatcgagac gggaagcttt tggtggtcac ggtccttagg gaaagtaatc
     1981 atgggatttt gctgtcgctg ctgaccgtgt gtgctcctta cttgaccaaa gcctgcaggc
     2041 gacagcctct gaagtctgtt caccctgagg tggtgtcaca gcagaattta gttatgttgt
     2101 agtgggtggc cacagagcgg aaggtgctag ggcctcagtg gagagggcac ccagaggggc
     2161 gtgggcctct gcagccatct gcacctcttc cttttccagt ctgtgttgtc tgtcattctt
     2221 ctgaattttg aataattagg tttatttatt actgtattta tggttttaaa gcacatttca
     2281 gtttgccttt gagacagctc ctgtctgttt cccaaaggcc tcccatgtgc tctgagccac
     2341 tatggccacc tcttttatgg cgctaaagat gattttagag cttggaagat gatcacgtgt
     2401 gttcattgca gcatgtcagc cctgtgaagc tttgggaagt ctgccctttc agagatggag
     2461 gattccagcc tagtccgtgt taaatacatc tcagcgctcc cactgaggga gtctaaggtg
     2521 atggacacag atggacttaa agagctgagg gcgagtcaga ggtaatcgag tactgagtat
     2581 gggatgccaa agtccttttc ctcctttgac acctcctccc taatgctttg ttggccgttc
     2641 ctttattgtg tggttacctc acaccaagcc tctctgtcct acaggagtga tcacctaaag
     2701 agcagggtct tgccagtagg tgtgtggtca ggaacaaagg gaatgaatgc atcctgcagc
     2761 tctgtcaacc tagaagcaaa gcctgggctg tatggcctgc tgcagtctct cggtggccag
     2821 tcagtgccac ccctccattc ttccatcatt gcagatgggc tttgtgggtg attatactgg
     2881 caaaacccac atgccctcta aaaatcagta agccattggg gccgcgagac cgacctgctc
     2941 atcaaggcgt cagatggctg ggctgaagtt gaatctgctt ttactgattg agtccactct
     3001 ccgtttcaga aacaaaccct ctttggagct attttcaagt cagtggcggt ctctgatttc
     3061 tcctgtttgt tgtggacccc tgacctgctc ttagctcggt agccaggccc ctggggcttt
     3121 ccctagttac tccatcttgt ctttccttgg gcttgttttc ttgtagtgca tagcagggaa
     3181 gtagaggggc ttctcatctc cctgtgtact gtcacttgct gggcattctg aaaccgttat
     3241 ctcttactga ttcttcctca ggagggtttt gtttgtttgt ttttgttttg tctcatgaac
     3301 ataaaatgcc taaggaagac acgcccatgt ataatgcatt cactattcac acactacatt
     3361 tttggaataa gaaaccttga gagacaaagt attattcagt gaaacgcagg taattatgga
     3421 gaacacagaa tgcatacctt gaaggttctg agaagtgtca attccttggt ccctccagtt
     3481 caaggttaaa gaatcaaaca aataagttat ctgctttttt gcttgccctg ctctttagag
     3541 tacaaataaa tactgtgcag ttaaaggaag gggtgctaaa agagcagaga ttaggattct
     3601 cttcacaaga gtggctgagt tcttaaaatt ttttcaattt gtctaatttc gttactttgt
     3661 taagagacaa ggctttttaa aaagacatat ctaaaatgct atttttccaa catcttatga
     3721 aaaatttcag caaacaaaaa gcatacactt acatccgaca tatactttta aatttcaaac
     3781 taccagtttc taaacaaaga gtctagcttt tagttcccat tgacaaacat ccacttggag
     3841 gacgtctccg tactcagcgt cagctctcag tcagagagcc ctgcttacga agaagatctc
     3901 cttttcaaca tgggctgcct aaaaggtctt cacaaaaatg gccatcggcc tccgtctttc
     3961 agaaagctag ctgtttcttc cggcttagcc tctctaactg cctatcagtg tcagggtgta
     4021 gctgtgttgg agagccttcc ttcccatctg tggctttctg attcctcagg acgctcacat
     4081 gcaaacacct tcctcagaga acacatagaa ataggtagca gcgtgaaagt agactattct
     4141 tagttatttt ccacagatgg attcatgcac tttaaaacta ttttatttgg tatttaggaa
     4201 aaattgactt ttaaagaaga atatattgtc ccactatatg aatatagaca agttaatctg
     4261 taactgttaa tattcatggg cttagatatt attgtggagt ttatgtgtac gttttgattt
     4321 tgatgagtta tacttagctc cttctttgtg aggaccctaa ataaagtctg tgattgtata
     4381 tttatgttta aagaccactc tgcaaaaagt tgcctttaac gttggtgtcc atggttctaa
     4441 ggtgtgggat tgagtgaccc taatatttat gtagatgttt ttagtgaaca gagagaagga
     4501 ggcacaaatt aagtctgtgc tgctccaaaa ctgcctttta aatggacagt aaagggtgtc
     4561 tatttaaagc gggatagaac agagtctggg agagggatca aaccaccatg tatgtcccgg
     4621 aattcattta gtgcactagt gctactttgt ccattggaac tgctttgtaa gccagaacct
     4681 tactggttct tcttgtgctc actggagaac tctccagcct tctttgccat ctgctagcag
     4741 gatcagctag atgcattttg gggtaggact tctctgctac atgtaaccct gtcctgtctc
     4801 cattctttag agcttaagag ttagtcagtt ccacttgtgg tgctgaagcc acagttgtga
     4861 atgtgtcctc gaaggcataa ttcagataca tttagtccag taccacaaac cctgtagtca
     4921 tgtgagtgcg ggggtaagaa gctgacctcc ctagcctgat ggtattgaca tcttataacc
     4981 aaacagcaaa ccacacagtt ttctcttcca gggcttctat ctaggtttct cctggggcta
     5041 aacatccaca ttaaccactg tccctaggtt tttccatgac cagaagtata gaatgtctgc
     5101 actttgggaa aagggaatca catgttccct ttgaagggtg agctttcagg tgaaggaagg
     5161 gaaccggtgt cctcctgctg tgcgggtact ttgttaaagg gcatgggttc tgtaaaaagc
     5221 aagtccttgt gtctatcgtg tgcccgtggt cagggagctg cacactttct ttggagagta
     5281 gaaaataagg atcaaacccc aggcacaagc tgagtatctg attcccactg acccaagcaa
     5341 gcactctttg ttcctggtgg cattttgggt gacactcagg caagagcttc ttggatctct
     5401 atgtattgga tgctggtcac tggcagactt gtcctttgtg taactcatct aacatttgtg
     5461 tgcattccca aagaagatcc agcgcgcaga gaaacactgt gaacactttg tggccagact
     5521 gcagtcactg ttcctgcagt cacacatcct gctgagatgt aatatagcct tctctagtcc
     5581 actgtctcaa agctaagaaa acgcataagg cctgataggg tatcgataat ctggctcctt
     5641 tacaaacagc tgttctcacg aactgagtac aaagacagtg cactggctgt gaaggtgtag
     5701 ggctggtctt ggtttgaacc catgatctga tttttagcat gtggattact ggcatggctc
     5761 ttcattctaa gatacaataa aaatggcgcc ccagagacgt gggaatatgc cctgctttat
     5821 gaaatttcag tttcctgtca ttttaattag gaagcttttt ggcttatctg gaggtaaaat
     5881 tgtgtatgtg aagtgactta tgggaacaga gtatattttc taaagttctg acagaggatc
     5941 atgaaagatt ctgaagtttg gagttgaatc atgtgtggtc tcactgaaga gccctaccag
     6001 tcaaggttga aatgcctggt ctttaatggc tccttttcat tgtcattgtt cattcttagg
     6061 ttcaggccag gactcatcta gaaaacatta tcttaattcc ttctctcata tccttaatag
     6121 tacattttat taagacgttt tatgttaaaa atgcatctgt gtcctgtttt gagatgattg
     6181 ttccataagc gaattagctt tcatctaatc agcctgagtt atttccattt agccttgtta
     6241 gagaacaagt cagtctggaa aaagcaatcc cgtgatgcat gacgttggta tatccatgtt
     6301 cccttcataa tgggaagtat tttgaaaccc acaggagaaa tgtttgatgc tttgtaataa
     6361 aaaccaaaag catttgcaaa tgctttgtaa tcaaagtgat agatccgaga gagcagagtg
     6421 ggtaaggaca gtggggaggc agggaggtgc gtggagagtt cctgaaccac gccatgccat
     6481 ttgcgtagat atccaaaggg ctactttgga gccattgtct gagccatcag tggttaaaag
     6541 cgatgtgttt tcttggtaaa tgtttaagca actgacaacc atgaagacat gctttttcct
     6601 tactgtttcg taccgtgtgc tgatgctaac caaggttacc aaaggcctgg aagggaaact
     6661 gtcacacagt ctcgtctttt ttcttcagaa tacaaacaac tccaaactct aatccattag
     6721 agtaacttgt tttccacgtc tccctgtcat gagaaatgct gtccatgtat gatttccaca
     6781 ttaagaactc ttagttcttt tgttccactg agtggttggt ttttcttctg tcagacaatg
     6841 ttttctcacc tcaaggcact gaatgtgttg ctgtgataca cggatgaatc ctgagccatg
     6901 gttttagcag ctcagttgtg gtgtttttat attatgtgat agttttgtga gatgcttttg
     6961 tgcattttgt cttctttttc aagttttgaa atctgtcatg aataaacttt ttcactgtgc
     7021 acctaaa
//
