LOCUS       XM_039096710            1336 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transmembrane and coiled-coil domains
            6 (Tmco6), transcript variant X1, mRNA.
ACCESSION   XM_039096710
VERSION     XM_039096710.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1336
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1336
                     /gene="Tmco6"
                     /gene_synonym="RGD1309263"
                     /note="transmembrane and coiled-coil domains 6; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 12 ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 121
                     samples with support for all annotated introns"
                     /db_xref="GeneID:291661"
                     /db_xref="RGD:1309263"
     CDS             354..1118
                     /gene="Tmco6"
                     /gene_synonym="RGD1309263"
                     /codon_start=1
                     /product="transmembrane and coiled-coil domain-containing
                     protein 6 isoform X1"
                     /protein_id="XP_038952638.1"
                     /db_xref="GeneID:291661"
                     /db_xref="RGD:1309263"
                     /translation="MLRLMGPGPKLNLGVAMEFAWCLHYIICSQVNNAVLLTHGALPT
                     LVLLLVDLAGAVQRTDDVGLELLACPVVRCLSNLLTEVPAEAMGQQMELRDERLVAAL
                     FIFLQFFLQKQPALLPEGLWLLNNLTANSPTFCTSLLSLNLIEPLLQLLPLSNVVCML
                     VLTVLCNVVEKGPAYCQRLWPGPLLSCLLNTLALSDTDVVGQSLELLQLLFLYQPEAA
                     HAFLQQSGLQALEKHQEETQLHDRIHALRQTTAILG"
ORIGIN      
        1 cttggggaag ccgaggtcca gcagtttctt cggctagccc aacggggaac agatgaaaag
       61 gagagggaga aggctctggt cagccttcgt cgaggcttgc agcaccctga cacacagcaa
      121 accttcatca ggagctgtgt ctgtacacac tggggaacct tatcgtggag agcgaggctg
      181 tgagaaagca gctcctgcca cagggcattg ttccggcttt tgctgcctgc atccagtccc
      241 cccatgtggc tgtgctggag gcccttggat atgccttgtc ccagcttctg caggctaagg
      301 aagctccaga gaagatcatt ccctctattc tggactccag ccttccccag cagatgctgc
      361 gattgatggg accaggcccg aagctgaatc ttggggttgc tatggagttt gcctggtgcc
      421 ttcactatat catttgcagc caggtcaaca atgctgtgct cctcacccac ggggctctgc
      481 ccacgttggt actgctgctg gtggacttgg ctggggctgt gcagagaacg gatgatgtgg
      541 gactagagct gcttgcatgc cctgtggttc ggtgtctaag caacctgtta acagaagtgc
      601 cagcggaggc catgggacag caaatggagc tcagagacga gcgacttgtg gcagccttat
      661 ttatctttct ccagttcttc cttcagaaac agcccgcctt gctacctgag ggcctctggc
      721 tcctcaacaa cctcactgca aatagtccta ctttttgtac ctcattgctc tccctgaatc
      781 tgattgagcc cctcttgcag ctgttgccgc tgtcaaatgt ggtctgcatg ttggtgctta
      841 cagttctgtg caacgttgta gagaagggtc ccgcttactg ccagcggtta tggccaggac
      901 ccttgctctc ctgcttgctt aacacactgg ctctctctga caccgacgtg gtaggccaga
      961 gtttggagct gctgcaactg ctgttcttgt atcagccaga ggctgcccat gcctttctgc
     1021 agcagtcagg gcttcaggcc ctagaaaagc atcaggagga aactcagctt cacgatagga
     1081 tacatgctct ccgacagaca actgctattc ttggatgatc tggctgctta atgtcacccc
     1141 ctgtccccta cagcatattt attctagggg ctcctatttc attttagaag ctagcagctt
     1201 tttgtatacc tgagagtggc gttgcacttg agatcatact gtttcatcct cttcagcaag
     1261 ttgggtaatg acatgcgaca tcccagcggg tagctggggt ttattgatga gaaataaaat
     1321 agtattttta tataaa
//
