LOCUS       NM_001106154            1842 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus transmembrane and coiled-coil domains 6 (Tmco6),
            mRNA.
ACCESSION   NM_001106154 XM_001065172 XM_214574
VERSION     NM_001106154.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1842)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1842)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473974.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001065172.1, XM_214574.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC166835.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132263
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1842
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /map="18p11"
     gene            1..1842
                     /gene="Tmco6"
                     /gene_synonym="RGD1309263"
                     /note="transmembrane and coiled-coil domains 6"
                     /db_xref="GeneID:291661"
                     /db_xref="RGD:1309263"
     exon            1..221
                     /gene="Tmco6"
                     /gene_synonym="RGD1309263"
                     /inference="alignment:Splign:2.1.0"
     CDS             137..1621
                     /gene="Tmco6"
                     /gene_synonym="RGD1309263"
                     /codon_start=1
                     /product="transmembrane and coiled-coil domain-containing
                     protein 6"
                     /protein_id="NP_001099624.1"
                     /db_xref="GeneID:291661"
                     /db_xref="RGD:1309263"
                     /translation="MWGRRQGRLRTLACGVEELRRRRREREAALRKARREQQLVSKRL
                     LREDAPEETGGQSAAVLLGEAEVQQFLRLAQRGTDEKEREKALVSLRRGLQHPDTQQT
                     FIRLEGSMRTLVGLLTSNRALLQLEAARCLHELSHSEQSAVAEACLPATSYLLTYLSG
                     HSSDFIELCLYTLGNLIVESEAVRKQLLPQGIVPAFAACIQSPHVAVLEALGYALSQL
                     LQAKEAPEKIIPSILDSSLPQQMLRLMGPGPKLNLGVAMEFAWCLHYIICSQVNNAVL
                     LTHGALPTLVLLLVDLAGAVQRTDDVGLELLACPVVRCLSNLLTEVPAEAMGQQMELR
                     DERLVAALFIFLQFFLQKQPALLPEGLWLLNNLTANSPTFCTSLLSLNLIEPLLQLLP
                     LSNVVCMLVLTVLCNVVEKGPAYCQRLWPGPLLSCLLNTLALSDTDVVGQSLELLQLL
                     FLYQPEAAHAFLQQSGLQALEKHQEETQLHDRIHALRQTTAILG"
     exon            222..334
                     /gene="Tmco6"
                     /gene_synonym="RGD1309263"
                     /inference="alignment:Splign:2.1.0"
     exon            335..450
                     /gene="Tmco6"
                     /gene_synonym="RGD1309263"
                     /inference="alignment:Splign:2.1.0"
     exon            451..634
                     /gene="Tmco6"
                     /gene_synonym="RGD1309263"
                     /inference="alignment:Splign:2.1.0"
     exon            635..739
                     /gene="Tmco6"
                     /gene_synonym="RGD1309263"
                     /inference="alignment:Splign:2.1.0"
     exon            740..825
                     /gene="Tmco6"
                     /gene_synonym="RGD1309263"
                     /inference="alignment:Splign:2.1.0"
     exon            826..942
                     /gene="Tmco6"
                     /gene_synonym="RGD1309263"
                     /inference="alignment:Splign:2.1.0"
     exon            943..1054
                     /gene="Tmco6"
                     /gene_synonym="RGD1309263"
                     /inference="alignment:Splign:2.1.0"
     exon            1055..1241
                     /gene="Tmco6"
                     /gene_synonym="RGD1309263"
                     /inference="alignment:Splign:2.1.0"
     exon            1242..1336
                     /gene="Tmco6"
                     /gene_synonym="RGD1309263"
                     /inference="alignment:Splign:2.1.0"
     exon            1337..1504
                     /gene="Tmco6"
                     /gene_synonym="RGD1309263"
                     /inference="alignment:Splign:2.1.0"
     exon            1505..1842
                     /gene="Tmco6"
                     /gene_synonym="RGD1309263"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cctcacgcac agccccaccc ctcacccctg cgccgggagt gactttttct tctggttttg
       61 tccagcgcct gcgcagttcc aaccttcccc gggccgcgcc gtagccgccg atctctagga
      121 tttttttggc tgcaagatgt ggggtcggcg gcagggccgc ctcaggacgc tggcgtgtgg
      181 ggtggaggaa ctgcggcgcc ggcggcggga acgggaggca gccctgcgga aggcgcggag
      241 ggagcagcaa ttggtcagca agaggctgct gagggaagac gccccggaag aaaccggagg
      301 ccagagtgca gctgtgctcc ttggggaagc cgaggtccag cagtttcttc ggctagccca
      361 acggggaaca gatgaaaagg agagggagaa ggctctggtc agccttcgtc gaggcttgca
      421 gcaccctgac acacagcaaa ccttcatcag gctggagggc agcatgcgga cccttgtcgg
      481 gctcttgacc agcaatcggg ccctgttgca gcttgaggcg gctcggtgcc tacatgagct
      541 ctctcattct gagcagtctg cagtggctga ggcctgcctg ccagctactt cctacctcct
      601 cacctacctc tctggtcaca gctcagactt catagagctg tgtctgtaca cactggggaa
      661 ccttatcgtg gagagcgagg ctgtgagaaa gcagctcctg ccacagggca ttgttccggc
      721 ttttgctgcc tgcatccagt ccccccatgt ggctgtgctg gaggcccttg gatatgcctt
      781 gtcccagctt ctgcaggcta aggaagctcc agagaagatc attccctcta ttctggactc
      841 cagccttccc cagcagatgc tgcgattgat gggaccaggc ccgaagctga atcttggggt
      901 tgctatggag tttgcctggt gccttcacta tatcatttgc agccaggtca acaatgctgt
      961 gctcctcacc cacggggctc tgcccacgtt ggtactgctg ctggtggact tggctggggc
     1021 tgtgcagaga acggatgatg tgggactaga gctgcttgca tgccctgtgg ttcggtgtct
     1081 aagcaacctg ttaacagaag tgccagcgga ggccatggga cagcaaatgg agctcagaga
     1141 cgagcgactt gtggcagcct tatttatctt tctccagttc ttccttcaga aacagcccgc
     1201 cttgctacct gagggcctct ggctcctcaa caacctcact gcaaatagtc ctactttttg
     1261 tacctcattg ctctccctga atctgattga gcccctcttg cagctgttgc cgctgtcaaa
     1321 tgtggtctgc atgttggtgc ttacagttct gtgcaacgtt gtagagaagg gtcccgctta
     1381 ctgccagcgg ttatggccag gacccttgct ctcctgcttg cttaacacac tggctctctc
     1441 tgacaccgac gtggtaggcc agagtttgga gctgctgcaa ctgctgttct tgtatcagcc
     1501 agaggctgcc catgcctttc tgcagcagtc agggcttcag gccctagaaa agcatcagga
     1561 ggaaactcag cttcacgata ggatacatgc tctccgacag acaactgcta ttcttggatg
     1621 atctggctgc ttaatgtcac cccctgtccc ctacagcata tttattctag gggctcctat
     1681 ttcattttag aagctagcag ctttttgtat acctgagagt ggcgttgcac ttgagatcat
     1741 actgtttcat cctcttcagc aagttgggta atgacatgcg acatcccagc gggtagctgg
     1801 ggtttattga tgagaaataa aatagtattt ttatataaag ct
//
