LOCUS       XM_017592191            1538 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transmembrane and coiled-coil domains
            5B (Tmco5b), transcript variant X2, mRNA.
ACCESSION   XM_017592191
VERSION     XM_017592191.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017592191.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017592191.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1538
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1538
                     /gene="Tmco5b"
                     /note="transmembrane and coiled-coil domains 5B; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:366158"
                     /db_xref="RGD:1561237"
     CDS             291..1214
                     /gene="Tmco5b"
                     /codon_start=1
                     /product="transmembrane and coiled-coil domain-containing
                     protein 5B isoform X1"
                     /protein_id="XP_017447680.1"
                     /db_xref="GeneID:366158"
                     /db_xref="RGD:1561237"
                     /translation="MEDVGQNLLDDEDEITEIPTLEAIKQNLKYLNSDLEKDLQRLDE
                     ANQTLLRKIQKKEESIQSLERDIALSIGRVPERDDFNEIIVQKETALKDLELEIAKLE
                     KKNKTLSKNVMELQKKISKGTKNAVSDPETLKKKVAELKVKLQKSTESCAQQEKEIAK
                     MESDYQSVFQLCEDQAHYIKKYQEILREMEKEKEVMLLEKEISKAQNDSSQVVKPGST
                     LVETIQSNMEKNIIKKQKRKFWLRHFRYLFFMIMIVIRLLGYVFFHLQYINPDFLVDT
                     LPMLMSRSSLKWLRDILFPFLTLEVEDVLPH"
ORIGIN      
        1 gtttgagctt ctttgtgtca agagaaaatg tgttctctca caacgtatat attatctctt
       61 tgatataatg acccaagaat gatttcttat ggaaggtttc atagaaaggt tgaatttgta
      121 tggtgtcctt aagggaaaaa agatgcagtt tgatgggaag aatattttca tcacagcttg
      181 tcaaccagtg gtacctagtg gatgtggctg tccagtgaaa atcctgctgt atcacattat
      241 ttataacgag catgtgagca ttactgatgt gacagtacag gaagtaaacg atggaagacg
      301 ttggacagaa cctgttggat gatgaggatg agattacaga aataccaact ttagaagcca
      361 taaaacagaa tctcaagtac ctgaactctg accttgaaaa ggatctacag cggctggatg
      421 aggccaatca gactcttctt agaaagattc aaaagaaaga agaatctata caaagtcttg
      481 aaagagatat tgccctgtcc ataggaagag tcccagagag ggatgacttc aatgagatca
      541 tagtacagaa ggagactgcc ttgaaggacc tggagctgga gatagcaaag ctggagaaaa
      601 agaataagac cctaagcaag aatgtgatgg aacttcagaa gaagatttca aaaggaacta
      661 agaatgctgt ctctgatcca gaaaccctga aaaagaaagt agcagaactc aaggtgaaac
      721 tacaaaagtc aaccgagtcc tgtgcacaac aagagaagga aatcgccaag atggaaagtg
      781 actaccaatc tgtatttcag ctctgtgaag accaggccca ctatataaag aaataccaag
      841 aaattctgag ggagatggag aaggaaaaag aagtgatgct gcttgaaaaa gaaatatcca
      901 aagcccagaa tgactcttcc caagtagtga aaccggggtc aactctggta gagaccattc
      961 aaagcaacat ggagaagaac atcattaaga aacagaagag gaagttttgg cttaggcact
     1021 tccggtacct tttcttcatg atcatgatcg tcatccggtt actgggctat gtgttcttcc
     1081 acctgcagta tataaacccg gactttctcg tggacaccct gcccatgctg atgagcagaa
     1141 gcagcttgaa gtggctaagg gacatattgt ttcccttcct taccctagaa gtggaggatg
     1201 tgctcccaca ctaggtgtac agccacacct gcccggcctc gcactcaccc agtggagggg
     1261 ccccggctgt ggtcctgtgc tagcggcgtg ggccaggcag gagcccgaag cctgagtcag
     1321 agcttctatg tgccagctga cttttctatt tcacttcctg gaatgtctct ctgccaaata
     1381 cagaatgcat tggaccagac tttaccgtgt tagtctgtgt gtcctgggga cttctatgta
     1441 gtcttcaagt tccctgttct gttgagacaa aacaaaaatg aaaactgtcc tagtatgccc
     1501 attttctgct tcattttatt aaaggaaaaa taaaatca
//
