LOCUS       XM_039106486            1208 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transmembrane and coiled-coil domains
            5A (Tmco5a), transcript variant X8, mRNA.
ACCESSION   XM_039106486
VERSION     XM_039106486.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1208
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1208
                     /gene="Tmco5a"
                     /note="transmembrane and coiled-coil domains 5A; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:499865"
                     /db_xref="RGD:1565206"
     CDS             140..1018
                     /gene="Tmco5a"
                     /codon_start=1
                     /product="transmembrane and coiled-coil domain-containing
                     protein 5A isoform X6"
                     /protein_id="XP_038962414.1"
                     /db_xref="GeneID:499865"
                     /db_xref="RGD:1565206"
                     /translation="MYEFPRNENGKVCSEEEQRGSEKMEILRLAQSKKNIISLNMDLE
                     RDMQRIDEANQELLLKIQEKESEVQRLEHEITQTGDPAEDEEWEKENYTVMEREQALQ
                     ELEEETARLERKNETLVHSISELQRKLTRKSQKIVRCEQGDLERTPEESKIMEDYVFV
                     SQLCEDQALCIKKYQEALKRIEEELETGYLEREVSKVLSMDSEREKTVSLNEKDGFIS
                     NGALRFSKRIFRSLLFSTLFFIRLLGYLIFHLSFINPDLLVNALPKILSRDVLWKLRC
                     FLFPSLTLETEDMLPH"
ORIGIN      
        1 caaagcacat cagtagaagg ggtctacaat ggaagaacgc aaggaaaatc accttgacta
       61 tgaactgcag atgcatcgtt ctctcgagat gtcccgtgat gggttgagaa tcattgaaac
      121 attgtagagt gtgattaaga tgtatgagtt tccaagaaat gaaaatggga aagtgtgctc
      181 cgaggaagaa cagagggggt cagaaaaaat ggaaatcttg agattggccc aatcaaagaa
      241 gaacattatc agtttgaaca tggacctcga aagggatatg cagagaatag atgaagccaa
      301 ccaggagctt cttctcaaaa tacaagaaaa agaaagtgaa gtccagaggc tggaacatga
      361 gatcacccag actggagacc ctgcagaaga cgaggaatgg gaaaaggaaa actacacagt
      421 gatggaaaga gaacaagctc tgcaggagct ggaggaagaa acagccagac tggagaggaa
      481 gaatgagact ctggtccaca gtatttcaga acttcagaga aagcttacaa ggaaatcgca
      541 aaagatagtc aggtgtgaac aaggtgatct ggaaagaacc ccagaagagt ccaagataat
      601 ggaagactat gtgttcgtgt ctcagctctg tgaagatcaa gctctctgca taaagaagta
      661 ccaggaagct ttgaagagga tagaagaaga actagagacc gggtaccttg aaagagaagt
      721 atcaaaagtc ttaagcatgg attctgagag agaaaagact gtaagcctaa atgagaagga
      781 tggtttcatc agcaacgggg cattgaggtt cagtaaaagg atttttcgct ccctcttgtt
      841 ctccacgctg tttttcatca gactgctggg gtacctgatc ttccatttaa gttttataaa
      901 tcccgacctc ctggtcaatg cactgcccaa gattctgagc agggacgtct tgtggaagct
      961 gcgatgtttc ctctttccat ctctcacact tgagacagaa gacatgttac cccactgatc
     1021 ccaggctgta cctgagggca gtggaaggca gaagggacac aggctcacaa atgggaggta
     1081 gcaaaatctg tggagggaag aggtttgcct cagtgtttcc cttgagcttt gcctacttag
     1141 tgactgtctg tcaccatgtc acttttccaa gattaacctt gcccagtaaa gaactctgtc
     1201 aaaagttt
//
