LOCUS       XM_039106481            1264 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transmembrane and coiled-coil domains
            5A (Tmco5a), transcript variant X3, mRNA.
ACCESSION   XM_039106481
VERSION     XM_039106481.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1264
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1264
                     /gene="Tmco5a"
                     /note="transmembrane and coiled-coil domains 5A; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:499865"
                     /db_xref="RGD:1565206"
     CDS             142..1074
                     /gene="Tmco5a"
                     /codon_start=1
                     /product="transmembrane and coiled-coil domain-containing
                     protein 5A isoform X2"
                     /protein_id="XP_038962409.1"
                     /db_xref="GeneID:499865"
                     /db_xref="RGD:1565206"
                     /translation="MYEFPRNENGKVCSEEEQRGSEKMEILRLAQSKKNIISLNMDLE
                     RDMQRIDEANQELLLKIQEKESEVQRLEHEITQTGDPAEDEEWEKENYTVMEREQALQ
                     ELEEETARLERKNETLVHSISELQRKLTRKSQKIVRCEQGDLERTPEESKVKLQLLES
                     SCADQEKELGKIMEDYVFVSQLCEDQALCIKYQEALKRIEEELETGYLEREVSKVLSM
                     DSEREKTVSLNEKDGFISNGALRFSKRIFRSLLFSTLFFIRLLGYLIFHLSFINPDLL
                     VNALPKILSRDVLWKLRCFLFPSLTLETEDMLPH"
ORIGIN      
        1 gccaaagcac atcagtagaa ggggtctaca atggaagaac gcaaggaaaa tcaccttgac
       61 tatgaactgc agatgcatcg ttctctcgag atgtcccgtg atgggttgag aatcattgaa
      121 acattgtaga gtgtgattaa gatgtatgag tttccaagaa atgaaaatgg gaaagtgtgc
      181 tccgaggaag aacagagggg gtcagaaaaa atggaaatct tgagattggc ccaatcaaag
      241 aagaacatta tcagtttgaa catggacctc gaaagggata tgcagagaat agatgaagcc
      301 aaccaggagc ttcttctcaa aatacaagaa aaagaaagtg aagtccagag gctggaacat
      361 gagatcaccc agactggaga ccctgcagaa gacgaggaat gggaaaagga aaactacaca
      421 gtgatggaaa gagaacaagc tctgcaggag ctggaggaag aaacagccag actggagagg
      481 aagaatgaga ctctggtcca cagtatttca gaacttcaga gaaagcttac aaggaaatcg
      541 caaaagatag tcaggtgtga acaaggtgat ctggaaagaa ccccagaaga gtccaaggtt
      601 aaactgcaac tgttagagtc ttcctgtgca gaccaagaaa aggagcttgg caagataatg
      661 gaagactatg tgttcgtgtc tcagctctgt gaagatcaag ctctctgcat aaagtaccag
      721 gaagctttga agaggataga agaagaacta gagaccgggt accttgaaag agaagtatca
      781 aaagtcttaa gcatggattc tgagagagaa aagactgtaa gcctaaatga gaaggatggt
      841 ttcatcagca acggggcatt gaggttcagt aaaaggattt ttcgctccct cttgttctcc
      901 acgctgtttt tcatcagact gctggggtac ctgatcttcc atttaagttt tataaatccc
      961 gacctcctgg tcaatgcact gcccaagatt ctgagcaggg acgtcttgtg gaagctgcga
     1021 tgtttcctct ttccatctct cacacttgag acagaagaca tgttacccca ctgatcccag
     1081 gctgtacctg agggcagtgg aaggcagaag ggacacaggc tcacaaatgg gaggtagcaa
     1141 aatctgtgga gggaagaggt ttgcctcagt gtttcccttg agctttgcct acttagtgac
     1201 tgtctgtcac catgtcactt ttccaagatt aaccttgccc agtaaagaac tctgtcaaaa
     1261 gttt
//
