LOCUS       XM_039106480            1269 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transmembrane and coiled-coil domains
            5A (Tmco5a), transcript variant X2, mRNA.
ACCESSION   XM_039106480
VERSION     XM_039106480.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039106480.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1269
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1269
                     /gene="Tmco5a"
                     /note="transmembrane and coiled-coil domains 5A; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:499865"
                     /db_xref="RGD:1565206"
     CDS             144..1079
                     /gene="Tmco5a"
                     /codon_start=1
                     /product="transmembrane and coiled-coil domain-containing
                     protein 5A isoform X1"
                     /protein_id="XP_038962408.1"
                     /db_xref="GeneID:499865"
                     /db_xref="RGD:1565206"
                     /translation="MYEFPRNENGKVCSEEEQRGSEKMEILRLAQSKKNIISLNMDLE
                     RDMQRIDEANQELLLKIQEKESEVQRLEHEITQTGDPAEDEEWEKENYTVMEREQALQ
                     ELEEETARLERKNETLVHSISELQRKLTRKSQKIVRCEQGDLERTPEESKVKLQLLES
                     SCADQEKELGKIMEDYVFVSQLCEDQALCIKKYQEALKRIEEELETGYLEREVSKVLS
                     MDSEREKTVSLNEKDGFISNGALRFSKRIFRSLLFSTLFFIRLLGYLIFHLSFINPDL
                     LVNALPKILSRDVLWKLRCFLFPSLTLETEDMLPH"
ORIGIN      
        1 atcaccttga ctatgattct ctccagtaca gggctattta aggaagtaaa gattctcttg
       61 aaatcagact gcagatgcat cgttctctcg agatgtcccg tgatgggttg agaatcattg
      121 aaacattgta gagtgtgatt aagatgtatg agtttccaag aaatgaaaat gggaaagtgt
      181 gctccgagga agaacagagg gggtcagaaa aaatggaaat cttgagattg gcccaatcaa
      241 agaagaacat tatcagtttg aacatggacc tcgaaaggga tatgcagaga atagatgaag
      301 ccaaccagga gcttcttctc aaaatacaag aaaaagaaag tgaagtccag aggctggaac
      361 atgagatcac ccagactgga gaccctgcag aagacgagga atgggaaaag gaaaactaca
      421 cagtgatgga aagagaacaa gctctgcagg agctggagga agaaacagcc agactggaga
      481 ggaagaatga gactctggtc cacagtattt cagaacttca gagaaagctt acaaggaaat
      541 cgcaaaagat agtcaggtgt gaacaaggtg atctggaaag aaccccagaa gagtccaagg
      601 ttaaactgca actgttagag tcttcctgtg cagaccaaga aaaggagctt ggcaagataa
      661 tggaagacta tgtgttcgtg tctcagctct gtgaagatca agctctctgc ataaagaagt
      721 accaggaagc tttgaagagg atagaagaag aactagagac cgggtacctt gaaagagaag
      781 tatcaaaagt cttaagcatg gattctgaga gagaaaagac tgtaagccta aatgagaagg
      841 atggtttcat cagcaacggg gcattgaggt tcagtaaaag gatttttcgc tccctcttgt
      901 tctccacgct gtttttcatc agactgctgg ggtacctgat cttccattta agttttataa
      961 atcccgacct cctggtcaat gcactgccca agattctgag cagggacgtc ttgtggaagc
     1021 tgcgatgttt cctctttcca tctctcacac ttgagacaga agacatgtta ccccactgat
     1081 cccaggctgt acctgagggc agtggaaggc agaagggaca caggctcaca aatgggaggt
     1141 agcaaaatct gtggagggaa gaggtttgcc tcagtgtttc ccttgagctt tgcctactta
     1201 gtgactgtct gtcaccatgt cacttttcca agattaacct tgcccagtaa agaactctgt
     1261 caaaagttt
//
