LOCUS       XM_039106479            1263 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transmembrane and coiled-coil domains
            5A (Tmco5a), transcript variant X1, mRNA.
ACCESSION   XM_039106479
VERSION     XM_039106479.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039106479.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1263
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1263
                     /gene="Tmco5a"
                     /note="transmembrane and coiled-coil domains 5A; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:499865"
                     /db_xref="RGD:1565206"
     CDS             138..1073
                     /gene="Tmco5a"
                     /codon_start=1
                     /product="transmembrane and coiled-coil domain-containing
                     protein 5A isoform X1"
                     /protein_id="XP_038962407.1"
                     /db_xref="GeneID:499865"
                     /db_xref="RGD:1565206"
                     /translation="MYEFPRNENGKVCSEEEQRGSEKMEILRLAQSKKNIISLNMDLE
                     RDMQRIDEANQELLLKIQEKESEVQRLEHEITQTGDPAEDEEWEKENYTVMEREQALQ
                     ELEEETARLERKNETLVHSISELQRKLTRKSQKIVRCEQGDLERTPEESKVKLQLLES
                     SCADQEKELGKIMEDYVFVSQLCEDQALCIKKYQEALKRIEEELETGYLEREVSKVLS
                     MDSEREKTVSLNEKDGFISNGALRFSKRIFRSLLFSTLFFIRLLGYLIFHLSFINPDL
                     LVNALPKILSRDVLWKLRCFLFPSLTLETEDMLPH"
ORIGIN      
        1 aagcacatca gtagaagggg tctacaatgg aagaacgcaa ggaaaatcac cttgactatg
       61 aactgcagat gcatcgttct ctcgagatgt cccgtgatgg gttgagaatc attgaaacat
      121 tgtagagtgt gattaagatg tatgagtttc caagaaatga aaatgggaaa gtgtgctccg
      181 aggaagaaca gagggggtca gaaaaaatgg aaatcttgag attggcccaa tcaaagaaga
      241 acattatcag tttgaacatg gacctcgaaa gggatatgca gagaatagat gaagccaacc
      301 aggagcttct tctcaaaata caagaaaaag aaagtgaagt ccagaggctg gaacatgaga
      361 tcacccagac tggagaccct gcagaagacg aggaatggga aaaggaaaac tacacagtga
      421 tggaaagaga acaagctctg caggagctgg aggaagaaac agccagactg gagaggaaga
      481 atgagactct ggtccacagt atttcagaac ttcagagaaa gcttacaagg aaatcgcaaa
      541 agatagtcag gtgtgaacaa ggtgatctgg aaagaacccc agaagagtcc aaggttaaac
      601 tgcaactgtt agagtcttcc tgtgcagacc aagaaaagga gcttggcaag ataatggaag
      661 actatgtgtt cgtgtctcag ctctgtgaag atcaagctct ctgcataaag aagtaccagg
      721 aagctttgaa gaggatagaa gaagaactag agaccgggta ccttgaaaga gaagtatcaa
      781 aagtcttaag catggattct gagagagaaa agactgtaag cctaaatgag aaggatggtt
      841 tcatcagcaa cggggcattg aggttcagta aaaggatttt tcgctccctc ttgttctcca
      901 cgctgttttt catcagactg ctggggtacc tgatcttcca tttaagtttt ataaatcccg
      961 acctcctggt caatgcactg cccaagattc tgagcaggga cgtcttgtgg aagctgcgat
     1021 gtttcctctt tccatctctc acacttgaga cagaagacat gttaccccac tgatcccagg
     1081 ctgtacctga gggcagtgga aggcagaagg gacacaggct cacaaatggg aggtagcaaa
     1141 atctgtggag ggaagaggtt tgcctcagtg tttcccttga gctttgccta cttagtgact
     1201 gtctgtcacc atgtcacttt tccaagatta accttgccca gtaaagaact ctgtcaaaag
     1261 ttt
//
