LOCUS       NM_001034949            2880 bp    mRNA    linear   ROD 11-DEC-2024
DEFINITION  Rattus norvegicus transmembrane and coiled-coil domains 4 (Tmco4),
            mRNA.
ACCESSION   NM_001034949 XM_575940
VERSION     NM_001034949.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2880)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC099755.1.
            
            On Oct 21, 2005 this sequence version replaced XM_575940.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC099755.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2880
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..2880
                     /gene="Tmco4"
                     /note="transmembrane and coiled-coil domains 4"
                     /db_xref="GeneID:500573"
                     /db_xref="RGD:1566357"
     exon            1..77
                     /gene="Tmco4"
                     /inference="alignment:Splign:2.1.0"
     exon            78..226
                     /gene="Tmco4"
                     /inference="alignment:Splign:2.1.0"
     exon            227..405
                     /gene="Tmco4"
                     /inference="alignment:Splign:2.1.0"
     CDS             236..2131
                     /gene="Tmco4"
                     /note="rCG31182-like"
                     /codon_start=1
                     /product="transmembrane and coiled-coil domain-containing
                     protein 4"
                     /protein_id="NP_001030121.1"
                     /db_xref="GeneID:500573"
                     /db_xref="RGD:1566357"
                     /translation="MATWNRPHPRLPVAPEPVAEGESQQPLGRELSEANRFAYAALCG
                     ISLSQLFPEPEQSSFCSEFVTGLVKWLHLSETVLPTMMAFASGLGGKGDDIFAQTLLK
                     DPILKDNPSAISQDLLSFSLKDGHYDARARVLVCHVISLLQVPMEELDILEEVFLESL
                     KDAKEEESETAEESRKRKEKRRKWKRYLLIGLATVGGGTVIGVTGGLAAPLVAAGAAT
                     IIGSAGAAALGSVAGIAVMTSLFGAAGAGLTGYKMKKRVGAIEEFMFLPLTDGKQLHI
                     TIAITGWLGSGRYRTFNAPWMALARSQEQYCLAWEAKYLMELGNALETILSGLANMVA
                     QEALKYTVLSGIVAALTLPASLLSVANVIDNPWGVCLHRSAEVGKHLAHILLSRQQGR
                     RPVTLIGFSLGARVIYFCLQEMAQEQDCQGIIEDVVLLGAPVEGDPKYWEPFRNVVSG
                     RIINGYCRGDWLLSFVYRTSSVQLRVAGLQPVLLQDRRMENVDLSSVVNGHLDYAKKM
                     DVILKAVGIRTKPGWSEKGLPLAPGGLPQEEPLQPATVSTDETIHQDEQKQGPAPGDS
                     LKSAIPSSASQAQVPAGLDQSTEDSLPAAAAPAEGHLVCSHGVGPNPLGCPDCTRETQ
                     ESCAELD"
     exon            406..580
                     /gene="Tmco4"
                     /inference="alignment:Splign:2.1.0"
     exon            581..608
                     /gene="Tmco4"
                     /inference="alignment:Splign:2.1.0"
     exon            609..741
                     /gene="Tmco4"
                     /inference="alignment:Splign:2.1.0"
     exon            742..839
                     /gene="Tmco4"
                     /inference="alignment:Splign:2.1.0"
     exon            840..983
                     /gene="Tmco4"
                     /inference="alignment:Splign:2.1.0"
     exon            984..1103
                     /gene="Tmco4"
                     /inference="alignment:Splign:2.1.0"
     exon            1104..1268
                     /gene="Tmco4"
                     /inference="alignment:Splign:2.1.0"
     exon            1269..1405
                     /gene="Tmco4"
                     /inference="alignment:Splign:2.1.0"
     exon            1406..1490
                     /gene="Tmco4"
                     /inference="alignment:Splign:2.1.0"
     exon            1491..1608
                     /gene="Tmco4"
                     /inference="alignment:Splign:2.1.0"
     exon            1609..1726
                     /gene="Tmco4"
                     /inference="alignment:Splign:2.1.0"
     exon            1727..2754
                     /gene="Tmco4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcggggaga gcggaggcgg gagcagcggg gcctctggga tcctagtcac cgtcccatcc
       61 gtcgctgtcg cctccaggtt ccacaccctc cgacccatgg ctggtttttc tggtttggtc
      121 tgtagagtga tttgcatatt tccttgaaga acccagtgaa actgcacagc ctgtccttgg
      181 acttacaaga gggacgccca cgcccctgtt ggttctccag aattgggagc tgggaatggc
      241 cacatggaac cggccgcacc caaggctgcc tgtggcacca gagccagttg cagaagggga
      301 gtcccagcag cccctggggc gagagctctc ggaggccaac cgttttgcct atgccgccct
      361 gtgtggcatc tctttgtcac agctgtttcc agaacctgag caaagctcct tctgctcaga
      421 atttgtgacg ggcctggtga aatggttgca tctgtctgaa actgtcctcc caaccatgat
      481 ggcctttgcc agcggcctgg gaggcaaagg agatgacatc tttgctcaga ctttattgaa
      541 ggaccccatt ctgaaagaca acccatcagc catcagtcag gacctcctga gcttctcact
      601 caaggatggg cactacgatg cccgagccag agtcctcgtt tgtcatgtga tctccctgct
      661 ccaggtgccc atggaggagc ttgatattct cgaagaggtg ttcctggaga gcctgaagga
      721 cgccaaagag gaggagtctg agaccgcaga ggagtcccgg aagagaaaag aaaaaaggag
      781 gaagtggaag cgctatctcc tgattggcct ggccacagtt ggaggcggga cagtgattgg
      841 tgtgacaggg ggcctagctg ccccccttgt tgccgccgga gctgcgacaa ttataggcag
      901 cgctggggca gctgcgttgg gctccgtggc tggcatcgct gttatgacct cactgtttgg
      961 tgcagccgga gctggcctga caggatacaa gatgaagaag cgagtcgggg ccattgagga
     1021 gttcatgttc ctgcctctga cggatggcaa gcagctacat atcaccatcg ccatcactgg
     1081 ctggctcggg tccggcagat accgtacatt caatgcccca tggatggccc tagcccgcag
     1141 ccaggagcag tactgcctgg cctgggaggc caagtacctg atggagttgg gcaatgccct
     1201 ggagaccatt ctcagtggcc tcgctaacat ggtggcccag gaggctctca agtacaccgt
     1261 gctctctggt atcgtggctg ctctaacctt gccggcctcc ctcctcagcg tcgccaatgt
     1321 catcgacaac ccctgggggg tgtgtctcca ccggtctgct gaggttggca agcacctagc
     1381 acacatcctt ctctcgaggc aacagggccg gaggcctgtc accttgattg gattcagcct
     1441 gggagccaga gtcatctact tctgtctgca agagatggct caggagcaag attgccaagg
     1501 gatcatcgag gatgttgtcc ttctgggcgc accagtagag ggggacccca agtactggga
     1561 accgttccgg aatgtggtgt ctgggagaat catcaacggc tactgcaggg gagactggct
     1621 gctgagtttc gtgtaccgca catcttctgt gcagctccgc gtcgcaggcc tccagcctgt
     1681 gctgttgcag gaccggagga tggagaacgt ggacctgtcc tcagtggtca atggccattt
     1741 ggactatgcc aagaaaatgg atgtcatcct gaaggctgtg ggcatccgca ccaagcctgg
     1801 ctggagtgag aagggactcc cactggcccc tggcggcctg ccccaagaag agcctctcca
     1861 gccagccaca gtctccacag atgagacaat ccaccaggat gaacaaaagc agggacctgc
     1921 cccaggagac agtctcaaat ccgccattcc ttccagtgcc agccaagccc aggtgccagc
     1981 agggctggac caatccacag aggactcgct ccctgctgcc gctgcaccag cagaggggca
     2041 cctggtctgc agccatggtg tgggacccaa cccactgggc tgccctgact gcacccgtga
     2101 gacccaggag tcctgtgcag aactagactg accctgcagg catctggact actctccaga
     2161 cgcctctatg caactttctc taacccccac gtgctcccca gagagctcca gaggtgggga
     2221 atttccacaa gtgcctttct gacacagaat ggagaggcaa gggagaaaac ctggcagtag
     2281 gacctgccag gtcaacccaa ccccaactcc aaaccagtgt gggctcctgc cctgcaggtc
     2341 ccatccagag gcccaaaagt cactgtggga ttggggatcc ccatgttccc tttcccccaa
     2401 cctcagtgga cctaagtgtc ttccagatcc tgtatctact ctccagggct gcccactgct
     2461 ccaggctctg cgagtgggcg ttttcaggtg ccaacgagac actttgttcc ctctgctcat
     2521 agaagaagca gctctgtcca gtacacttgt gtgggctggg tgcattgtaa aatggcagga
     2581 gtaacagaca tacatgtgat atgatggcgc cccaccctga gcttgtgaaa cacgtgagcc
     2641 tggatagaat tgtagcggag gaataaaggc agaagtcaca gtcagcgtct tgagacctag
     2701 gccttggtaa gtgtggatta catgaggagg gaccaataaa cactgtttac cacaaaaaaa
     2761 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     2821 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//
