LOCUS       NM_001108084            5416 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus transmembrane and coiled-coil domain family 3
            (Tmcc3), mRNA.
ACCESSION   NM_001108084 XM_001080385 XM_235072
VERSION     NM_001108084.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5416)
  AUTHORS   Sohn,W.J., Kim,J.Y., Kim,D., Park,J.A., Lee,Y. and Kwon,H.J.
  TITLE     Expression and characterization of transmembrane and coiled-coil
            domain family 3
  JOURNAL   BMB Rep 49 (11), 629-634 (2016)
   PUBMED   27697108
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001108084.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360176.2440124.1,
                                           SRR26643285.27185.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-253               JAXUCZ010000007.1  30987133-30987385
            254-1170            JAXUCZ010000007.1  31046371-31047287
            1171-1306           JAXUCZ010000007.1  31050258-31050393
            1307-5416           JAXUCZ010000007.1  31054770-31058879
FEATURES             Location/Qualifiers
     source          1..5416
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q13"
     gene            1..5416
                     /gene="Tmcc3"
                     /gene_synonym="RGD1307241"
                     /note="transmembrane and coiled-coil domain family 3"
                     /db_xref="GeneID:314751"
                     /db_xref="RGD:1307241"
     exon            1..253
                     /gene="Tmcc3"
                     /gene_synonym="RGD1307241"
                     /inference="alignment:Splign:2.1.0"
     CDS             176..1609
                     /gene="Tmcc3"
                     /gene_synonym="RGD1307241"
                     /note="transmembrane and coiled coil domains 3;
                     transmembrane and coiled-coil domains protein 3"
                     /codon_start=1
                     /product="transmembrane and coiled-coil domain protein 3"
                     /protein_id="NP_001101554.1"
                     /db_xref="GeneID:314751"
                     /db_xref="RGD:1307241"
                     /translation="MPGSDTALTVDRTYSDPGRHHRCKSRVERHDMNTLSLPLNIRRG
                     GSDTNLNFDVPDGILDFHKVKLSADSLRQKILKVTEQIKIEQTSRDGNVAEYLKLVSS
                     ADKQQAGRIKQVFEKKNQKSAHSIAQLQKKLEQYHRKLREIEQNGATRSSKDISKDSL
                     KEIQHSLKDAHVKSRTAPHCLESSKSSMPGVSLTPPVFVFNKSREFANLIRNKFGSAD
                     NIAHLKNSLEEFRPEASPRAYGGSATIVNKPKYGSDDECSSGTSGSADSNGNQSFGAG
                     GASTLDSQGKLAIILEELREIKVTQAQLAEDIEALKVQFKREYGFISQTLQEERYRYE
                     RLEDQLHDLTELHQHETANLKQELASAEEKVAYQAYERSRDIQEALESCQTRISKLEL
                     HQQEQQTLQTDAVNAKVLLGKCINVVLAFMTVILVCVSTLAKFVSPMMKSRSHILGTF
                     FAVTLLAIFCKNWDHILCAIERIIIPR"
     exon            254..1170
                     /gene="Tmcc3"
                     /gene_synonym="RGD1307241"
                     /inference="alignment:Splign:2.1.0"
     exon            1171..1306
                     /gene="Tmcc3"
                     /gene_synonym="RGD1307241"
                     /inference="alignment:Splign:2.1.0"
     exon            1307..5416
                     /gene="Tmcc3"
                     /gene_synonym="RGD1307241"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccagcggcgg cggcgcaggg ccgcggggtg tcggcagcag ctgcagccgc ccgcgccacc
       61 cccctcggcc gcggctccgg ggcgagggtg agcggagcac ggcgggcagc tgccacccgg
      121 cgccgagtgg agcggcggcc cccgagaacg caaagttgtc agtctaagcg cagacatgcc
      181 gggcagcgac acggcgctca ctgtggaccg gacctactcc gaccccggcc ggcaccaccg
      241 ctgcaagagc cgggtagaac gccatgacat gaataccctc agcctgcccc tgaatatccg
      301 ccgaggaggg tcagacacca acctcaactt cgacgtccca gatggtatcc tggatttcca
      361 caaggtcaaa ctcagcgcag acagcctgag acagaaaatc ttaaaggtga cggagcagat
      421 aaaaatcgag cagacgtccc gagatgggaa cgttgccgag tatctgaaac tggtcagcag
      481 tgctgacaag cagcaggccg ggcgcatcaa gcaggtcttt gagaagaaga accagaagtc
      541 agcccactcc atcgcccagc tgcagaagaa gttggagcag tatcacagga aactcaggga
      601 gattgaacag aatggagcga ccagaagctc gaaggacatt tctaaagaca gcctgaagga
      661 aatacaacac tctctgaagg atgcccacgt gaaatctcga actgctcccc actgcctaga
      721 gagcagtaag tcgagcatgc caggggtatc cctcacgccc cccgtgtttg tcttcaataa
      781 gtccagagag tttgccaact tgatccggaa taagtttggc agtgcagaca acatcgctca
      841 cttgaagaat tccctagaag agttcaggcc cgaagccagc cccagggctt acggcggaag
      901 cgctaccatc gtgaacaagc ccaagtacgg cagcgatgac gagtgttcta gtggtacatc
      961 cggctcagct gacagcaatg ggaaccagtc ctttggggct ggtggagcca gcaccctgga
     1021 cagccaggga aaacttgcca taatcctaga ggaactgagg gagatcaagg ttacccaagc
     1081 ccagctggca gaggacatcg aggcgttgaa ggtgcagttt aagagagaat atggctttat
     1141 ctctcagact ctgcaagagg agaggtacag gtatgagcga cttgaagacc agctccatga
     1201 cctgacagag ctgcaccagc atgagacagc taacctgaag caggagctag ccagcgccga
     1261 ggagaaggtg gcctaccagg cctatgagcg ctcaagggac atccaggaag ccttggagtc
     1321 ctgccagaca cgaatctcca agctggagct gcatcaacag gagcagcaga ccctgcagac
     1381 agatgccgtg aatgccaagg tcctgctggg gaagtgcatc aacgtggtcc tggccttcat
     1441 gactgtcatc ctggtatgcg tgtccaccct ggccaagttc gtctcgccca tgatgaagag
     1501 tcgctcccac atcctgggca ccttctttgc tgtgactctt ctcgcaatat tctgtaaaaa
     1561 ctgggaccac atcttgtgtg ctatagaaag gataatcatc ccgagatgag ccaccggctc
     1621 ccaccttcac atccttccaa gtttttattt tgaagaaaac tctgtgcata catactacca
     1681 aaatttctga atgaacggct gtgccaaaga cggcgagaag gacccagagc tgtgtggtgt
     1741 aaatacgtag agtctcttaa cccagtagca gttgccaaca cagtccctgt atgtggttca
     1801 cgtgaaactg tcccagagtc ctcctcacat ggctcactgc cttaatcaga gcagatctcc
     1861 agcccactgt cgagctcggt atggtaaagc cctgctgatt gagcgccatg actgctcaca
     1921 gccgtgttct gagttcccct ggtcagcaag aatatggtag gatttggggg aagtgagcaa
     1981 acacaggtac ttggcagggt tgagctcctg ggggcctata gaagctcagt gagtctctct
     2041 gtgatctacc ccacttgtcc acaggtggct ctgtgtccta ctgtgtaccc agcgttcaca
     2101 gcggtcaatg gtgtgtgtcc tcataacatg gaaatcttct acctgctcat ccagcgaaag
     2161 tctgcccgac tagtagcatt gcactttaca aggtagacac taggatttac agccgggctc
     2221 atgcccaggg caccgcacac ctgatttcat cttgcgtgct tagcagtgct ctgccctcag
     2281 agtgtgtggc tgagctgttg tcaaactgta gcttcggtaa ctcggggtcc ttgtgagcgt
     2341 ccctggggag ggccatgctc tggcaactgt taactgtgat aaatgccctt agaggatggg
     2401 atgcacttta tgtgaatcac tttactcaca ggtctgtggg gatcggattg caaagcttgc
     2461 tcaggaaatg aaaatgaatg gcgttcttgt tgcccggttt tctttttctc agagacagca
     2521 aaatcaaact tcataaagct tctgtgcacg aggcaggaca ctggaggcct aagagggatg
     2581 tgaactttta ggtctaatca aatggtggct agattagtga gagcccttta cccagatgag
     2641 agcaggaaag gtccccttag ggacgtgaaa ggcagcagga ataaaattaa gtcctgcgct
     2701 ggaactgagc tcctgctgtc tcttaaggct cagacaagcc ctgagctcac aggataaacg
     2761 caccaacagt gagcagaaag agtacaagag ctgctgtgtt ttatttgatg gctgccatta
     2821 tactgacaaa cctagttttc tgtgtacact accaagagga gagagatttc attggatgct
     2881 gtcagccagc cagccaggac tctggtcctc ccaccccacc tgctgaaggt gtaaaaatac
     2941 tcttaaatac ttccagaaga acctctcttg gatttaagga tcctcactta ggggcattcc
     3001 ctgggggggc ggggcgttgg gggtggcagc atgtagcaat ttagtacaag tccaggttat
     3061 atgagtggga cccacacagc tccaaccttt gcccctcccc cattcccaac ttccaagtca
     3121 ataattcggc aaattcagta aattcagtaa ttttagtaaa ttaagtattt aaccatcacc
     3181 cctaaccaat ttcagagcca cacttttcaa aaaataataa atagaacttt atgaaataca
     3241 aaggattttg aaatcaggga cgggggaatc cccagcccct ctcctaccca cggcattgtc
     3301 cccacacagg agacagaggt ttctaatcca agaaagggag agccatgatc ttcccttatt
     3361 cgtgtacttt aatggcctgc tcccttacct gtggcaccag actccatctg cctgcacccg
     3421 gaaacaagct gggccctgct gacctcccgt tcctatttgt aaatatttcc acgtggcact
     3481 tagagcgtgc cggggggcct gggataccca tgaatgctgc tatcggggtt tcaggataag
     3541 tttgaataca gccttagagg cttagctagg gctctgggag aacccacaaa ggggttctgt
     3601 tctcatgtca gcacccgccc cacccccaca cagcctaaca ggacggctct cgattgacac
     3661 ttgtcagacc tacaagctgt gtttcttctt cctgatgaga aaacccaaaa cagcacactc
     3721 aacaccctcc agaccgagct ttggacagaa tctgttagag accagcacca ttgtgaacta
     3781 gtcggggtgg gggcatccaa gtcatcatag gttcctccta aagaacttag attcccaccg
     3841 actcccatta aatgtcaaat caccttcttg gcctgcgtac atgcagctca tgtggcatag
     3901 ttgttccggt cttatggaaa atttgtgaga ctttttattt ttttaaataa gattgtatag
     3961 ttcaaggaga ctttgattcc tccgttcttt attctctcaa gggctatgac ccctctctcg
     4021 ctctcttgaa cacataactt acacactgaa gaaatgaatt atataaatac acaattagag
     4081 gtagcaatgg agctgcgagg tgccctggaa ttggaataga tttgtaatcg agtcagccca
     4141 tcttgttttg ccctttacgt tgggggtatt cctcgtgttg ggggctagtt acagatgtgt
     4201 gagcatgttc cctgctagct taggaacact ggtgagggat tctagatgct ggactttgga
     4261 tctctagtga cgatatcatg ctcaatcatc agaagagtga ttacagaggc cagaacagaa
     4321 cgctaagata ctaagaataa taaatattaa aaaggaaaaa gcagccgctc acagtgaaac
     4381 aagcggtgac ttcaagtgct ctctctgatt tggactatga aggcaggatt ccccattaca
     4441 agctcctggc ttgtgactta gttttccggt gttcttgtct tgtctcctgg cgttcattca
     4501 catactctgt agctcttgac tttctttaag catctttaag aagtgcctgg ccacttctct
     4561 aacacagggt ggagctgtgg tgagggagct tgtcctcccg gcccccctcc ctgccaccca
     4621 gcaactaatt acttggttct tttgggttga attttaaata ccaaattact tttgtgttga
     4681 atggcaatgt tatcgtggtg gtgttgttaa tgttttgttc agctgtccaa tccagaccta
     4741 attgtctggg ttttgaagaa acacatgtac tcactgataa ggaggtgtat gattaaacaa
     4801 cacattttgc atgttttctt aattctgacc ttgggctggg gcatgaatat gggcttattt
     4861 ggagagatgg ttcaatgtta gcaggtaact tttaaggtgt ctaaaaaaag acaaatcaca
     4921 gaaaacaatt agattggcct atttgtatca aaaatacaga gctttaaaaa cgtgtcataa
     4981 tgggaactgg gtaacttgtt agaaataaag ccaaaatata attttctgtc atggatataa
     5041 tcctgtgcgt aaagagtctg gaagtgaggt ggaacacctg gggtgtctga gggtggttta
     5101 catgttgctg ttctcatata tttaaagcat gtctgccatg tttgttctaa aagaaacatt
     5161 tcaactaaac gtaccatgtg tttgtttcag atgcgctggg gcaatagcag caattctgac
     5221 tggaccgtca ggagtgctaa ttgtaacttc tgttgcagaa ttcttgtggg ctgctacata
     5281 gttttgtatc tgcctaaagt tgtaatttct ctgtagatct tccccatagc ggtgtcgtca
     5341 aggaattcaa agcaggtgcc attatttttt aaataattga tgtttgcttt ggtgttaaat
     5401 aaaagaacta gatttc
//
