LOCUS       XM_039090832            2639 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transmembrane and coiled-coil domain
            family 2 (Tmcc2), transcript variant X4, mRNA.
ACCESSION   XM_039090832
VERSION     XM_039090832.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2639
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2639
                     /gene="Tmcc2"
                     /gene_synonym="RGD1311960"
                     /note="transmembrane and coiled-coil domain family 2;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 2 mRNAs, 46 ESTs, 3 long SRA reads, 18
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 45 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:305095"
                     /db_xref="RGD:1311960"
     CDS             33..1445
                     /gene="Tmcc2"
                     /gene_synonym="RGD1311960"
                     /codon_start=1
                     /product="transmembrane and coiled-coil domains protein 2
                     isoform X4"
                     /protein_id="XP_038946760.1"
                     /db_xref="GeneID:305095"
                     /db_xref="RGD:1311960"
                     /translation="MSYLCLAEGDKGDLVALSLPSGPGHGDTDGPISLDVPDGAPDPQ
                     RTKAAIDHLHQKILKITEQIKIEQEARDDNVAEYLKLANNADKQQVSRIKQVFEKKNQ
                     KSAQTIAQLHKKLEQYRRRLKEIEQNGPSRQPKDVLRDMQQGLKDVGANMRAGISGFG
                     GGVVEGVKGSLSGLSQATHTAVVSKPREFASLIRNKFGSADNIAHLKDPMEDGPPEEA
                     ARALSGSATLVSSPKYGSDDECSSASASSAGAGSNSGAGPAGALGSPRSNTLYGAPGN
                     LDTLLEELREIKDGQSHLEDSMEDLKTQLQRDYTYMTQCLQEERYRYERLEEQLNDLT
                     ELHQNEMTNLKQELASMEEKVAYQSYERARDIQEAVESCLTRVTKLELQQQQQQVVQL
                     EGVENANARALLGKFINVILALMAVLLVFVSTIANFITPLMKTRLRITSTALLLLVLF
                     LLWKHWDSLTYLLEHVLLPS"
ORIGIN      
        1 gcccctgcct tccgagtatt gggattaaag gcatgagcta cctctgcctg gctgagggtg
       61 acaagggaga tcttgtggcc ctgagcctcc cctctggccc tggccatggt gacactgatg
      121 gacccatcag cctggatgtg ccagatggag cgccagaccc ccagcggact aaggctgcca
      181 ttgaccacct gcaccaaaag atcctgaaga tcactgagca gatcaagatc gagcaggagg
      241 cgcgggatga taacgtggct gagtacctga agctggccaa caatgcggac aagcagcagg
      301 tgtcgcgcat caagcaggtg tttgaaaaga agaaccagaa gtcagcccag accatcgccc
      361 agctgcacaa gaaactggag cagtaccgtc ggcgcctgaa ggagatcgag cagaatgggc
      421 cctcgaggca gcccaaggat gtgctacgtg atatgcagca agggctgaag gatgtaggcg
      481 ccaacatgcg tgccggcatc agtggcttcg ggggtggcgt ggtggagggc gtcaagggca
      541 gtctctctgg cctctcgcaa gccacccaca ctgcagtggt gtccaagccc cgggagttcg
      601 ccagcctcat tcgcaacaag ttcggcagtg cggacaacat cgcccacctc aaggacccta
      661 tggaagatgg accccctgaa gaggcagccc gggcgctgag tggcagtgcc acattggttt
      721 ccagccccaa gtacggcagt gacgatgaat gctcgagtgc cagtgccagc tcagctggag
      781 caggcagcaa ctccggggct gggccagcag gcgcactggg gagccctaga tccaacactc
      841 tttatggtgc ccctggaaat ctggacactc tgctggagga gcttagggag ataaaggatg
      901 gccagtcaca cctggaggac tccatggagg acttgaagac tcagctgcag agggactaca
      961 cttacatgac ccagtgcctg caagaagagc gctacaggta tgagaggctg gaggagcagc
     1021 tgaacgacct gactgagctt caccagaatg agatgaccaa cctaaagcag gagcttgcca
     1081 gcatggagga gaaggtggcc taccagtcct acgagagggc ccgggatatt caggaggccg
     1141 tggagtcttg cctgacccgt gtcaccaagc tggagctgca gcagcagcag cagcaggtgg
     1201 tgcagttaga aggtgtagag aacgccaacg cgcgcgctct gctgggcaag ttcatcaacg
     1261 tgatcctggc actcatggca gtgctgctgg tgtttgtgtc caccattgcc aacttcatca
     1321 cgcccctcat gaagacgcgc ctccgtatca ccagcaccgc cctcctgctc ctcgtcctct
     1381 tcctactctg gaagcactgg gactcgctca cctacctcct ggagcatgtg ctgctgccca
     1441 gctgagcggc tgctgtccac cctgtgctct ctggattcca ctggccacac gcatctccag
     1501 gagggcccag gcctcctgag tccctcgggg tctgtcatgt gacctctttg gcccctaact
     1561 gtcccttctc tgcactgctt ctgtctggca ccatctccct ttcagcctga aggttgcaga
     1621 gagggtgctc tgggctggag ggagcaggga cactcacagc caaatggagc agccgggaga
     1681 caccggggct gaattatttg aattatttgc agtcacatgg gacttttctg ggctgaccgg
     1741 aggatgctct agtcatgaaa gccactaaga tagaaggcca gtctcgattt ccctagggaa
     1801 gagcccatcc tagaggcagc ccagtttcct cccatggcaa cagtctggat ataagccagt
     1861 gggcggcagt gttgagccca aagggtgcag aaaggggagg gtccccaggc ttggggccag
     1921 acagcaggct tggcacagcc actgggagct cagcctcccc tccccctgct tctcttccca
     1981 cttgaactgg tttgggactg gtttctggag gctgggtggg gtgtggcttt gggtttgtgt
     2041 tttctctgct catctttctg cctgtcactg ggtgtgctgt ttttctgaaa aaaacaggcc
     2101 ccaaggggcc ctgagcctcc agcccaaacc cttagacctc tgggatcaca ttgagttcta
     2161 tttatttatt tatttattta cttatttatt tatttgttcc tatcctttcc acgcttctgc
     2221 ccggctgggc tccagggaga ggaccctacc cgtcctccct ctgaagcccg ggcttattct
     2281 tggttcatca caccccagac cacgtctccg gtgttcctgg ctggaagaag gggcgtgtgg
     2341 ccatgcagcc cgctctccca agccacccca gcagaagggt tggagggggc atggcctctt
     2401 ttatatatat ctatttattt tacgtgtgtg tctttgtgag gaagaggatg tttgtcattt
     2461 ccttacgctc tggagtgtgt gttccaattc tgcacagccc agcctcccca ggagcccttc
     2521 caagcacagt ggggatttct cagaataggg gagaggaacc catgaagcag gagaagcagt
     2581 gcctgccagc catggtggac cttcctaaga aataaatatc ctctatgttt tcaaaccat
//
