LOCUS       XM_039109036            3134 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transmembrane and coiled-coil domain
            family 1 (Tmcc1), transcript variant X1, mRNA.
ACCESSION   XM_039109036
VERSION     XM_039109036.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039109036.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3134
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3134
                     /gene="Tmcc1"
                     /note="transmembrane and coiled-coil domain family 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 15 ESTs, 17 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 106 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:312654"
                     /db_xref="RGD:1311909"
     CDS             314..2395
                     /gene="Tmcc1"
                     /codon_start=1
                     /product="transmembrane and coiled-coil domains protein 1
                     isoform X1"
                     /protein_id="XP_038964964.1"
                     /db_xref="GeneID:312654"
                     /db_xref="RGD:1311909"
                     /translation="MEPSGSEQLYEDPDPGGRPQDAEARRQAESEQKLSKMTHNALEN
                     INVIGQGLKHLFQHQRRRSSVSPHDVQQIQADAEPEVDLDSQNTCAEIDGVSTHPTAL
                     NRVLQQIRVPPKMKRGTSLHSRRGKSEAPKGSPQINRKSGQEVASVIQSGRPRSSSTT
                     DAPTSSSVIEIACAAAVCVPGEEATAERLEYFPGPLVAGVKAESQKSKQVNGKQYMLE
                     EEASAWALDYMACKIERLEVSSLAQTSSAVASSTDGSIHTESVDGIPDPQRTKAAIAH
                     LQQKILKLTEQIKIAQTARDDNVAEYLKLANSADKQQAARIKQVFEKKNQKSAQTILQ
                     LQKKLEHYHRKLREVEQNGIPRQPKDVFRDMHQGLKDVGAKVTGFSEGVVDSVKGGFS
                     SFSQATHSAAGAVVSKPREIASLIRNKFGSADNIPNLKDSLEEGQVDDGGKALGVISN
                     FQSSPKYGSEEDCSSATSGSVGANSTTGGIAVGASSSKTNTLDMQSSGFDALLHEVQE
                     IRETQTRLEESFETLKEHYQRDYSLIMQTLQEERYRCERLEEQLNDLTELHQNEILNL
                     KQELASMEEKIAYQSYERARDIQEALEACQTRISKMELQQQQQQVVQLEGLENATARN
                     LLGKLINILLAVMAVLLVFVSTVANCVVPLMKTRNRTFSTLFLVAFIAFLWKHWDALF
                     SYVDRLFSPPR"
ORIGIN      
        1 ggcgggccgg gagggggggg tggtcggggt ggggatggac cgggcgcggc ggccgcagct
       61 gcaggagccg gcgctggaga ccgagccacg gcgctggcgg agacgccggc tgtccgtcgt
      121 ctctccaccg cttctcctaa gaggacatca gtgcccccag gacgtgcttg agggagagca
      181 atgaaggtag gcatgaagcc tccgtctctc agctgcatgc acagtcactc ttgaagcaaa
      241 tgcctaccta atttgacagt cttggtgtgt ttaagttttt tgagtttgca aataagcttt
      301 attaagctta ctgatggagc cttccggcag tgagcagttg tatgaggacc ctgaccctgg
      361 aggcagaccc caagatgcag aagccaggag gcaggcagag tcagaacaaa agttatctaa
      421 aatgacccac aatgctctgg agaacattaa cgtgattggc caaggcttga agcatctctt
      481 ccagcaccag cgcaggcggt catcagtgtc tccacacgat gtgcagcaga ttcaggcaga
      541 tgcagagcct gaagtggatc tggacagtca gaacacatgt gctgagattg atggtgtctc
      601 cacccatccc acagctctga atcgtgttct ccagcagatc cgagtgccgc ccaagatgaa
      661 gagaggaaca agcttgcata gtaggcgggg caaatcagaa gccccaaagg gaagtcccca
      721 gatcaacagg aaatctggcc aagaggtagc atctgttata caatcaggtc gacctaggtc
      781 ttcatccaca actgatgctc ctaccagctc ttctgtgata gaaatagctt gtgctgctgc
      841 tgtgtgtgta cctggagagg aggcaactgc agaacggcta gagtatttcc ctggaccctt
      901 ggtggctgga gttaaggcag aatcccagaa gtcaaagcaa gtcaatggga agcagtatat
      961 gttagaagag gaggcatctg cttgggccct ggactacatg gcatgcaaga tcgagcgttt
     1021 ggaagtaagc agcctcgccc agacttccag tgccgtggcc tccagcaccg atggcagcat
     1081 ccacacagag tctgtggatg gaataccaga tcctcagcgc acaaaagctg ccattgcaca
     1141 cctgcagcag aagatcctaa agctcacaga acagatcaaa attgcacaga cagcccgaga
     1201 cgacaacgtt gctgaatact tgaagcttgc caacagtgca gacaagcagc aggctgctcg
     1261 catcaaacag gtgtttgaga agaaaaacca gaaatctgca cagactattc tccagctgca
     1321 aaagaagctt gagcattacc accgaaagct ccgtgaggtg gaacagaatg ggatcccccg
     1381 gcagcctaag gatgtcttca gggacatgca ccagggtctg aaggatgtgg gtgcaaaggt
     1441 gactggcttc agtgaaggtg tagtggacag tgtcaaaggt ggattttcca gcttctccca
     1501 ggctacccat tcagcagcag gggctgtcgt ctccaaaccc agagagattg cctcactgat
     1561 tcggaacaaa tttggtagtg cagacaatat ccctaacctg aaagactcat tggaggaagg
     1621 acaagtggat gacgggggaa aggctttagg ggtgatttca aactttcagt caagtccaaa
     1681 atacggtagt gaggaagatt gttctagtgc cacttcaggc tcagtaggag ccaacagtac
     1741 cactgggggc attgctgtag gagcgtccag ctccaaaaca aacaccctag acatgcagag
     1801 ctcagggttt gatgcactgc tgcatgaggt ccaggagatc cgggaaaccc agaccagact
     1861 ggaggagtcc ttcgagaccc tcaaggagca ctaccagagg gactactcct taataatgca
     1921 gaccttacag gaagagcgat atagatgtga acgactagaa gagcaactga atgacctgac
     1981 agagctccac cagaatgaga tcctgaactt aaagcaggag ttggccagca tggaagagaa
     2041 aatcgcctat cagtcatatg aacgggcccg ggacatccag gaggccctgg aggcctgtca
     2101 aacccgcatt tccaagatgg agctgcagca gcaacagcag caggtggtgc aactggaagg
     2161 gctggagaat gccactgccc gaaaccttct gggcaaactc atcaatatcc tcctggctgt
     2221 catggcagtc ctcttggtct ttgtgtccac ggtagccaac tgtgtggtcc ccctcatgaa
     2281 gacacgcaac aggacgttca gcactttatt ccttgtggct ttcattgcct ttctttggaa
     2341 gcactgggat gccctcttca gctacgtgga ccgactcttc tcacctccca gatgatgctg
     2401 gcacttctca ccgtctggcg agtgcatgcc aagagagcta gacagcagca ttacccactc
     2461 tgaagttttc tacaagagag ttgagtgaat ctgtttacat ttagaataat gtttttttct
     2521 tcaagagacg caattgcaat agtatttttt agattttatc caagaagttt tttgggcaaa
     2581 aatcttggat catttttatg tagcatgatt ttccttggga tgcaaatctg aaacagtcct
     2641 ttaacatgaa caatctgcaa cacactgaag ggcattctga attgatgctt ggagtactgc
     2701 actaaaccca ctaaacagat gcaaaaacct gaccaggccc aacacccacc ctgcctgggc
     2761 tcctctcctc atccagacta actctactgt gaagtcccac cacattccag tttggaattt
     2821 tagattcagg gtggatttcc cctgccgtgg aagaacacag gcatctccct agctttctca
     2881 tgctaaccct gaaatatgat cacttctgaa cctgctcctt tcttaactgc caggattgga
     2941 ggcaagatca tcaagcccat aggatgacca tgcaatcctg ttcagtattg tgaagtagcc
     3001 cttaatccta acttttaagc aaaatccctt ggccgcactt ttaaggtttg gttgtttgtt
     3061 tttttatata tatatgtgta tagttaccaa cttaaaaata aaaaatccga acaacatact
     3121 tgaagaatgt aata
//
