LOCUS       NM_001191950            4490 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus transmembrane channel-like 7 (Tmc7), mRNA.
ACCESSION   NM_001191950 XM_574547
VERSION     NM_001191950.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4490)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Oct 17, 2022 this sequence version replaced NM_001191950.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643429.3327.1,
                                           SRR26643298.4879.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-127               JAXUCZ010000001.1  182339821-182339947 c
            128-368             JAXUCZ010000001.1  182320753-182320993 c
            369-517             JAXUCZ010000001.1  182317373-182317521 c
            518-685             JAXUCZ010000001.1  182313813-182313980 c
            686-768             JAXUCZ010000001.1  182311445-182311527 c
            769-914             JAXUCZ010000001.1  182307687-182307832 c
            915-1062            JAXUCZ010000001.1  182304872-182305019 c
            1063-1236           JAXUCZ010000001.1  182303407-182303580 c
            1237-1394           JAXUCZ010000001.1  182302251-182302408 c
            1395-1512           JAXUCZ010000001.1  182300265-182300382 c
            1513-1610           JAXUCZ010000001.1  182299996-182300093 c
            1611-1797           JAXUCZ010000001.1  182298256-182298442 c
            1798-1928           JAXUCZ010000001.1  182295408-182295538 c
            1929-2084           JAXUCZ010000001.1  182293790-182293945 c
            2085-2163           JAXUCZ010000001.1  182291727-182291805 c
            2164-4490           JAXUCZ010000001.1  182287742-182290068 c
FEATURES             Location/Qualifiers
     source          1..4490
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q35"
     gene            1..4490
                     /gene="Tmc7"
                     /gene_synonym="RGD1564267"
                     /note="transmembrane channel-like 7"
                     /db_xref="GeneID:499254"
                     /db_xref="RGD:1564267"
     exon            1..127
                     /gene="Tmc7"
                     /gene_synonym="RGD1564267"
                     /inference="alignment:Splign:2.1.0"
     CDS             64..2244
                     /gene="Tmc7"
                     /gene_synonym="RGD1564267"
                     /codon_start=1
                     /product="transmembrane channel-like protein 7"
                     /protein_id="NP_001178879.1"
                     /db_xref="GeneID:499254"
                     /db_xref="RGD:1564267"
                     /translation="MSEGNAGDPGHGSSRQRAVHPENLSLGPSCFSPPVNFLQELPSY
                     RSVARRRTNILSRDKQSGTLLKPTGSFSSQLDGGITENLNSQSIRKYALNISEKRRLR
                     DIQETQMKYLSEWDQWKRYSSKSWKRFIEKAREMTTHLELWRKDIRSIEGKFGTGIQS
                     YFSFLRFLVVLNLVIFLIIFMLVLLPIILTKYKITNSTFVLIPFKDMDMQCTLYPISS
                     SGLIYFYSYIIDLLSGTGFLEETSLFYGHYTIDGVKFQNFTYDLPLAYLISTIAYLAL
                     SLLWIVKRSVEGFKINLIRSEEHFQSYCNKIFAGWDFCITNRSMAELKHSSLRYELRA
                     DLEEERIRQKIAERTSEETIRIYSLRLFLNCIVLAVLAACFYAIYLATTFSQEHMKKE
                     IDKMVFGENLLILYLPSIVITLANFITPIIFAKIIHYEDYSPGFEIRLTILRCVFMRL
                     ATICVLVFTLGSKITSCGDSTCELCGYNQKLYPCWETQVGQEMYKLMIFDFIIILAVT
                     LFVDFPRKLLVTYCASSKLIQCWGQQEFAIPDNVLGIVYGQTICWIGAFFSPLLPAIA
                     TLKFVIIFYVKELSLLYTCRPSPRQFRASNSNFFFLLVLLIGLCLAIIPLTISMARIP
                     SSKACGPFTNFNTTWEVIPQTVSTFPSSLQTLIHGVTSEAFAVPFFMIICLVMFYFIA
                     LAGAHKRVVAQLREQLSLESRDKRYLIQKLTEAQRDVRSQPALA"
     exon            128..368
                     /gene="Tmc7"
                     /gene_synonym="RGD1564267"
                     /inference="alignment:Splign:2.1.0"
     exon            369..517
                     /gene="Tmc7"
                     /gene_synonym="RGD1564267"
                     /inference="alignment:Splign:2.1.0"
     exon            518..685
                     /gene="Tmc7"
                     /gene_synonym="RGD1564267"
                     /inference="alignment:Splign:2.1.0"
     exon            686..768
                     /gene="Tmc7"
                     /gene_synonym="RGD1564267"
                     /inference="alignment:Splign:2.1.0"
     exon            769..914
                     /gene="Tmc7"
                     /gene_synonym="RGD1564267"
                     /inference="alignment:Splign:2.1.0"
     exon            915..1062
                     /gene="Tmc7"
                     /gene_synonym="RGD1564267"
                     /inference="alignment:Splign:2.1.0"
     exon            1063..1236
                     /gene="Tmc7"
                     /gene_synonym="RGD1564267"
                     /inference="alignment:Splign:2.1.0"
     exon            1237..1394
                     /gene="Tmc7"
                     /gene_synonym="RGD1564267"
                     /inference="alignment:Splign:2.1.0"
     exon            1395..1512
                     /gene="Tmc7"
                     /gene_synonym="RGD1564267"
                     /inference="alignment:Splign:2.1.0"
     exon            1513..1610
                     /gene="Tmc7"
                     /gene_synonym="RGD1564267"
                     /inference="alignment:Splign:2.1.0"
     exon            1611..1797
                     /gene="Tmc7"
                     /gene_synonym="RGD1564267"
                     /inference="alignment:Splign:2.1.0"
     exon            1798..1928
                     /gene="Tmc7"
                     /gene_synonym="RGD1564267"
                     /inference="alignment:Splign:2.1.0"
     exon            1929..2084
                     /gene="Tmc7"
                     /gene_synonym="RGD1564267"
                     /inference="alignment:Splign:2.1.0"
     exon            2085..2163
                     /gene="Tmc7"
                     /gene_synonym="RGD1564267"
                     /inference="alignment:Splign:2.1.0"
     exon            2164..4490
                     /gene="Tmc7"
                     /gene_synonym="RGD1564267"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atccggaacc cgaagaggcg gggccgcggg tccaggcggc tggagggtcc tcgccgagcc
       61 gtgatgagcg agggcaacgc gggcgacccg ggccacgggt ccagccggca gcgagccgta
      121 cacccagaga acctgtccct gggtcctagc tgcttctctc cacccgtgaa cttccttcaa
      181 gagctgccaa gctaccggtc agtggcacgt aggaggacaa acatcctctc tcgggacaag
      241 cagagtggca ccctgctgaa gccaacgggc tctttcagtt cccagctaga tggagggatc
      301 acagaaaacc tcaacagcca atccatccgc aagtacgcgc tgaacatctc tgagaagcgg
      361 agactaaggg acattcagga aacccagatg aagtatttat cagagtggga ccagtggaaa
      421 cgctacagca gcaagtcctg gaagaggttc attgagaaag ctcgagagat gacgactcac
      481 ctggaactgt ggcgcaaaga catccgcagc attgaaggga agtttggcac ggggatccag
      541 tcctacttct cgttcctgcg gttcctggtg gtgctgaacc tggtgatatt cctgatcatc
      601 ttcatgctgg ttttgctccc tatcattctc accaagtaca agattaccaa cagcactttc
      661 gtgctcatcc cgttcaaaga catggatatg cagtgcacgc tgtatccaat cagtagctct
      721 gggctcattt acttctacag ttacatcata gacctgctgt ctggcacggg attcttggag
      781 gaaaccagcc ttttctatgg acactacacc attgatggtg taaaattcca gaacttcacg
      841 tatgatctgc ccttggctta cttgataagc acaatcgcct acctggctct gagcctcctt
      901 tggatagtga aaaggtcggt ggaagggttc aagatcaacc tgattcggag cgaggagcac
      961 tttcagagtt actgtaataa gatcttcgct ggctgggact tctgcatcac caaccgcagc
     1021 atggccgagc tgaaacacag cagcttgcgg tatgagctcc gagcagatct ggaggaagag
     1081 agaatacggc agaaaatagc agaaaggacc tcagaagaaa ccatccgcat ttactctttg
     1141 aggctgtttt tgaactgtat cgtgctggcc gtgctagcag cctgctttta tgccatctac
     1201 ctagcaacta ccttctcgca agaacacatg aaaaaagaaa ttgacaagat ggtctttggg
     1261 gagaacctgt tgatattgta ccttccatcc attgtgatta ccctggccaa tttcattacc
     1321 ccaatcatct ttgccaagat catccactac gaggattact caccaggctt tgagatccgc
     1381 ctgaccattc ttaggtgtgt ctttatgcgg ctggccacca tctgtgtgct ggtgttcacg
     1441 ctgggctcca agatcacatc ctgtggcgac agcacatgtg aactctgtgg ctataaccag
     1501 aaactctacc cgtgctggga gactcaggtg ggacaggaaa tgtacaagct gatgatcttc
     1561 gacttcatca tcatcctggc tgtgacactg tttgtggatt tccctaggaa gctcctggtg
     1621 acctactgtg cctcctcaaa gctgatccag tgctgggggc agcaggaatt cgccatccca
     1681 gacaatgtcc tgggcatcgt gtatgggcag accatctgct ggattggagc cttcttctcc
     1741 ccactcctcc ctgccatcgc caccttgaaa ttcgttatca tcttttacgt gaaagagttg
     1801 agtcttctct acacctgcag accgtcccct cggcagttca gagcgtccaa ttctaacttc
     1861 ttcttcctgc tggtgttgct gattgggctg tgcttggcca tcatacctct gacaatcagc
     1921 atggctcgca tcccttcctc aaaagcctgc ggcccattca ccaacttcaa caccacctgg
     1981 gaggttatcc cccagaccgt gagcaccttc cccagctcac tgcagaccct gatccatggc
     2041 gttacatcag aagcctttgc agtgcctttc ttcatgatca tctgcctggt catgttctac
     2101 ttcattgcgc tggctggagc acacaagcgg gtggtggcac agctccgaga gcagctgtcc
     2161 ctggagagtc gtgacaagcg ttatcttatc cagaaactaa cagaagctca acgggatgtt
     2221 cggagccagc cggctttagc atgaagatgc tgcctgcaac tcctcagcac ataactctga
     2281 cgaccctaca acccggggtt tgagtggaaa tggcttttgg tgacttagcc aagcaggctg
     2341 acccccagcc tgaccccaca gggagtggtg gctcgctgtg ggctccacca aaacactaac
     2401 gtctcaagct gctcagcctc tcaagatcag agaggggaga cttttattta ttttgttttt
     2461 gtttagactt ttgtattatt tttaaaaagg gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt
     2521 gtgtgtgtgt gtgtgtgtgt gtgtgtgttg tgttttagag taaaactgag agttctttgg
     2581 aagcctttcc aaataccctc ccaatgccac tgtgacttaa aatgaaacct gactgctttt
     2641 tttttttcaa atggacagga agcttcagat gctaaggctt agaacagctg acaggaatgt
     2701 agagaggcca tcatggtggc agaaaggaag tccatccctg ctgtgtaccc tggacacact
     2761 tgaattccct cccaggccag tcagtatcac tcccttgagc aggagactgg ggcaggtgac
     2821 agcctcagct tctcagctct ctgggacttt tctccagcct tgttcgctcc tccagggaaa
     2881 gtgaccttag ctaactggtt agccaccagc ctttagtctc cacctggccc caagttctaa
     2941 gatctggtga caggattgaa gaggggtcta accgtgcaag gtgcacagac ggttcctctc
     3001 tgttctccaa gtgtcattcc tcttccttgc aggagctctt cactcctgaa ggacatgggg
     3061 tgtatcagag ccaggctgca acatgccttt tggtactgga gctgggttta aggatcaggg
     3121 gttatatgtg tgatgtcaga tacaggtcca cagcctaaga acagtccata atgcaagcat
     3181 gcgttaggtt ccgactactt aagtatacat ttcaaagggc taggttttgt ttgcctgagt
     3241 ttaaaacttt gtgtgtgtat aaaaactttg tttttataaa acattacaaa gacagagtat
     3301 ctcttgagat ctcctgtatc gtaaaagccg tatttaataa atacctcatc atgagcctct
     3361 ccagaggtga cccttttagt ggtgtctgat ttgatccgct ttcactgtca gtgtgctgct
     3421 gttctgtgat ggataggtgg agtcttgtac tgtttttcac tggctcctaa catttacatt
     3481 tcaattaatg ttttagaaag ctgccaagaa ggatttccct tctctgacca ctgtgttgtt
     3541 cttcaaagtg attggctttt ccctctggaa gcaaagcaaa cttgttgtgg cttacatgtc
     3601 tgtatgtgta taaagggtgc tttgtcaggg gcgtgtgtgt gtgtgtgtgt gtgtgtgtgt
     3661 gtgtgtgtgt gtgtccatgg cttacatatc tgaattcgta taaagggccc ttggtcaggt
     3721 gtgtctgtgt gtgcacatgc acatccggag gtggaactca tatcttcaaa ctcaacacaa
     3781 tcctttcttt catcttccat gaggctgtta acctgggata tttttgttcc tgtgggaacg
     3841 tgtgcttcct aacattttct tctgtttgaa gatctatgag gttttaagcc caacaagagg
     3901 agttttgagt aaaccaaagt tcattccatc ctcattttac aaatcctagt tgttagcatt
     3961 tttgcctagt gtctccatgt aacactcttg ccctcactgt ggccctgaga tctgccttcc
     4021 tgtgtttgtg ggaatggtgg ataaaatgaa tgatatattt tattacaaaa cagataccaa
     4081 aatatgccaa ttgtatgttg gttttagtta gagctggtca tgtgcttacc ccttacttga
     4141 atatttttga taactttgaa taaccaggca atgtctatag ttttaaagtg tggctctcta
     4201 acaggtatgt gtgaaactac tgatacagtg tcttgaaagt ttaaagtatg gttgtcccgc
     4261 aatactctgt aaagttgctc tttgccactg cagttagagg aagtagcatt ttgacctcca
     4321 tggatatgtt aggtgagtct tgtctcttct cggctattca gaagccaaga aaaagcatgt
     4381 ttgtgtgttt tgaagatatc ttaagcattt tatatattgc taccattgaa agccactgtt
     4441 tgtatttatt ttactattct ataaagatat aataaatatt gaaatagcta
//
