LOCUS       NM_001401626            3593 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus transmembrane channel-like 5 (Tmc5), transcript
            variant 1, mRNA.
ACCESSION   NM_001401626 XM_039085210
VERSION     NM_001401626.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3593)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000043.1.
            
            [WARNING] On Apr 3, 2024 this sequence was replaced by
            NM_001401626.2.
            
            On Feb 16, 2022 this sequence version replaced XM_039085210.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN13663593,
                              SAMN13663594 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-78                JACYVU010000043.1  10295727-10295804
            79-885              JACYVU010000043.1  10312988-10313794
            886-989             JACYVU010000043.1  10317641-10317744
            990-1079            JACYVU010000043.1  10319128-10319217
            1080-1179           JACYVU010000043.1  10327275-10327374
            1180-1267           JACYVU010000043.1  10328912-10328999
            1268-1516           JACYVU010000043.1  10331010-10331258
            1517-1668           JACYVU010000043.1  10334133-10334284
            1669-1813           JACYVU010000043.1  10337425-10337569
            1814-1969           JACYVU010000043.1  10339112-10339267
            1970-2121           JACYVU010000043.1  10347882-10348033
            2122-2200           JACYVU010000043.1  10350865-10350943
            2201-2298           JACYVU010000043.1  10352663-10352760
            2299-2394           JACYVU010000043.1  10355681-10355776
            2395-2470           JACYVU010000043.1  10363393-10363468
            2471-2604           JACYVU010000043.1  10363688-10363821
            2605-2778           JACYVU010000043.1  10365685-10365858
            2779-2857           JACYVU010000043.1  10369704-10369782
            2858-2962           JACYVU010000043.1  10371103-10371207
            2963-3005           JACYVU010000043.1  10372278-10372320
            3006-3593           JACYVU010000043.1  10373347-10373934
FEATURES             Location/Qualifiers
     source          1..3593
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q35"
     gene            1..3593
                     /gene="Tmc5"
                     /note="transmembrane channel-like 5"
                     /db_xref="GeneID:365360"
                     /db_xref="RGD:1307037"
     exon            1..78
                     /gene="Tmc5"
                     /inference="alignment:Splign:2.1.0"
     exon            79..885
                     /gene="Tmc5"
                     /inference="alignment:Splign:2.1.0"
     CDS             155..3052
                     /gene="Tmc5"
                     /note="isoform 1 is encoded by transcript variant 1;
                     transmembrane channel-like protein 5; transmembrane
                     channel-like gene family 5"
                     /codon_start=1
                     /product="transmembrane channel-like protein 5 isoform 1"
                     /protein_id="NP_001388555.1"
                     /db_xref="GeneID:365360"
                     /db_xref="RGD:1307037"
                     /translation="MSSFHKNSSYMEDPDYPGYSGSQNHTQNYLRTQDDLEFPGCLDN
                     PGFHHPRRNPYSSDSRTNPDYHHSLAEPDYPGSPSDADYQNTRCHPRSAHPRTRPDYE
                     PDYEPDYNDFQSESYHPDLSMEPDYPGSHGHPGFAGVRSSVNSTGPRTNLGYLDLEEP
                     DYPGAQGNSYHSGPRSHSNLPGSRRNAGYAGSRINSYPDSLGEPDYPGAENQPNSPDF
                     YGKPDYPGAEEGDVYSPSKTLGVIGRSRGSFGILGREDGDYPEGIEMASLGMAGDPRN
                     GYVNPAYMRGSSPVCPDRNLLLCARDWNTSPQGQKLIASLVPMTSRDRIKTIRNQPRT
                     MQEKRELRKIVDKEKNKQSHGTFEANCCAQCLSSLSLAYRRTKSSLSELLNYISLWQK
                     RFKVIGGKFGTSVLSYFSFLRWLLKFNIFSFVMNFSFIIIPQFTVGEKNTLQFTGLEF
                     FTGAGYFRETVMYYGFYTNSTIRHRMGGASYNMQLAYIFTIGACLVICFFSLLFSMAK
                     YFRNNFINPHIYSRGIAKLIFCWDFTVTHEKAVKLKQKNLSTEIRENLSEIRQENDRL
                     TLNQKLTRFSVHVAAWLVSTGITAACCVAVYYLAEYNSEFLKTHKNPGAVLLLPFVVS
                     CINLAVPRFYSMFRLVERYEIPRQEVYVLLIRNIFLKISIVGILCYYWLNIVALSGEE
                     CWETLIGQDIYRLLLMDFVFSLADSLLGEFLRRLIGMKFITSLSLQEFDIARNVLELI
                     YAQTLAWLGIFFCPLLPFIQMITLFIMFYVKNVSLMMNFQPPSKAWRASQMITFFIFL
                     LFFPSFTGVLCTLAITIWRLKPSADCGPFRGLPSFIQSIYSWIDTLSHRPGYLWVVWI
                     YQNLIGSVHFFFILTLIVLIITYLYWQITEGRKVMIRLLHEQIINEGKDKMFLIEKLT
                     KLQDIERRANPSTLVLERREVEQQSPLHLEELDAAPDLRLRRSMQEENAIA"
     exon            886..989
                     /gene="Tmc5"
                     /inference="alignment:Splign:2.1.0"
     exon            990..1079
                     /gene="Tmc5"
                     /inference="alignment:Splign:2.1.0"
     exon            1080..1179
                     /gene="Tmc5"
                     /inference="alignment:Splign:2.1.0"
     exon            1180..1267
                     /gene="Tmc5"
                     /inference="alignment:Splign:2.1.0"
     exon            1268..1516
                     /gene="Tmc5"
                     /inference="alignment:Splign:2.1.0"
     exon            1517..1668
                     /gene="Tmc5"
                     /inference="alignment:Splign:2.1.0"
     exon            1669..1813
                     /gene="Tmc5"
                     /inference="alignment:Splign:2.1.0"
     exon            1814..1969
                     /gene="Tmc5"
                     /inference="alignment:Splign:2.1.0"
     exon            1970..2121
                     /gene="Tmc5"
                     /inference="alignment:Splign:2.1.0"
     exon            2122..2200
                     /gene="Tmc5"
                     /inference="alignment:Splign:2.1.0"
     exon            2201..2298
                     /gene="Tmc5"
                     /inference="alignment:Splign:2.1.0"
     exon            2299..2394
                     /gene="Tmc5"
                     /inference="alignment:Splign:2.1.0"
     exon            2395..2470
                     /gene="Tmc5"
                     /inference="alignment:Splign:2.1.0"
     exon            2471..2604
                     /gene="Tmc5"
                     /inference="alignment:Splign:2.1.0"
     exon            2605..2778
                     /gene="Tmc5"
                     /inference="alignment:Splign:2.1.0"
     exon            2779..2857
                     /gene="Tmc5"
                     /inference="alignment:Splign:2.1.0"
     exon            2858..2962
                     /gene="Tmc5"
                     /inference="alignment:Splign:2.1.0"
     exon            2963..3005
                     /gene="Tmc5"
                     /inference="alignment:Splign:2.1.0"
     exon            3006..3593
                     /gene="Tmc5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gttggagccc cagtgagggc cttggtaaac cacagcactc agcccagacg ctggaaaaca
       61 agcagatcag tgcaaaaggt tagtaaaaaa ggtccctgag ttgctacgga tacggtgatg
      121 ctttaacatg actgggtgag gactctgcag catcatgtct tccttccaca agaatagcag
      181 ctatatggaa gatcctgact accctggtta ttcagggtct cagaaccaca cgcagaacta
      241 tttgagaact caagatgatc tggaattccc agggtgtctg gacaatccag gcttccacca
      301 ccccagaaga aacccatatt cttcggactc tagaacaaat ccagactacc accactccct
      361 agcagaacca gattatcctg gatctccgag tgacgcagac tatcaaaata ccaggtgtca
      421 cccacgctcc gcacatccca gaaccaggcc agactatgag ccagactatg agccagacta
      481 taatgacttc cagagcgaat cctatcaccc agatttatct atggagcctg actaccctgg
      541 ctctcacggt catcctggtt ttgcaggagt ccgaagcagt gtgaactcta caggtcctag
      601 aaccaatcta ggctatttgg atctggaaga gccagactac cctggagctc aaggcaactc
      661 ttaccattct ggccccagat cccattccaa cctgccaggc tccagaagaa atgcaggcta
      721 tgctgggtcc agaatcaatt cctacccaga ctctttgggg gaacctgatt acccaggtgc
      781 cgagaaccaa ccaaactctc ccgactttta tggaaagcca gactatcctg gtgctgaaga
      841 gggcgatgtc tacagtcctt ctaagactct gggagtcatc gggaggagtc gtggctcctt
      901 tggcatacta gggagagagg atggagatta ccctgaaggc attgaaatgg catccctggg
      961 gatggcaggt gatcctagaa atggctatgt gaaccctgct tacatgagag gaagcagtcc
     1021 tgtctgtcca gatagaaacc tgttgctgtg cgcacgtgat tggaacacat caccccaagg
     1081 acaaaaacta attgcatccc tggttcccat gacatccaga gacagaatca aaaccatcag
     1141 aaaccagccc aggaccatgc aagagaagag ggagcttaga aagatagttg acaaagaaaa
     1201 aaacaaacag tctcatggta ccttcgaggc caactgctgt gctcagtgtc tcagctccct
     1261 ttccctggct taccgaagaa ccaagagcag cctttcagag ctcctcaatt acatcagcct
     1321 gtggcagaag agattcaagg tcatcggagg caagtttgga accagcgtcc tgtcctattt
     1381 cagcttcctg aggtggcttt tgaagttcaa catcttctca ttcgtcatga acttcagctt
     1441 catcatcatc ccacaattca ccgtgggtga gaagaacacc ctccagttca ctggcttgga
     1501 gtttttcaca ggggcgggtt attttaggga gacggtgatg tactatgggt tttacaccaa
     1561 ctctaccatc cggcatagga tgggcggagc gtcctacaac atgcagctgg cctacatctt
     1621 cacaatcgga gcctgcctgg tcatctgctt cttcagtcta ctcttcagca tggctaagta
     1681 cttccggaac aacttcatca acccccacat atactccaga gggattgcta aactcatctt
     1741 ttgctgggat ttcactgtca ctcatgaaaa agctgttaag ctaaaacaga agaatctgag
     1801 cacagagatc agggagaacc tgtctgagat ccgccaggag aacgacaggc tcacactcaa
     1861 ccagaagctg acccgatttt ctgttcacgt agccgcctgg ctcgtctcta ctggaataac
     1921 cgcagcctgc tgtgtagctg tatattactt ggctgagtat aactctgagt tcctgaagac
     1981 gcacaagaac cccggggcgg tgttgttact gcccttcgtt gtatcctgca tcaacctggc
     2041 tgttcctcgc ttctactcca tgttccgcct ggtggagagg tatgagatac cgagacagga
     2101 agtctacgtc ctcttgatcc gaaacatctt tctgaagatc tccattgttg gaattctttg
     2161 ttactattgg ctcaacatcg tggccctgtc tggcgaagag tgctgggaga ccctcattgg
     2221 ccaggacatc taccgtctcc ttctcatgga cttcgtgttc tccttggccg actccttact
     2281 gggggagttt ctgagaaggc tcattgggat gaaattcatc accagtctca gcttacagga
     2341 gtttgacatt gccaggaatg ttctagaact gatctatgca caaactctgg cctggcttgg
     2401 aattttcttc tgccctctgc tgccttttat ccaaatgatc actctcttca ttatgtttta
     2461 tgtcaaaaat gtcagcctga tgatgaactt ccagcctcca agcaaggcct ggcgggcctc
     2521 acagatgata accttcttca tttttttgct cttcttcccg tccttcacgg gagtgctgtg
     2581 caccctggct atcaccatct ggagactgaa gccttcggct gactgtggcc cattccgagg
     2641 tctgccttcc ttcatccagt ccatctacag ctggatcgac accctgagtc acaggcctgg
     2701 ctacctgtgg gtcgtctgga tctaccagaa cctcattgga agcgtgcact tctttttcat
     2761 cctcaccctc attgtgctga tcatcaccta tctttactgg cagattacag agggaaggaa
     2821 ggtcatgatc cggctgctcc atgaacagat cattaatgag ggcaaagata agatgttcct
     2881 gatagaaaaa ttgaccaagc tgcaggatat agagcggaga gccaacccca gtacgcttgt
     2941 cctggaaagg agagaagtgg agcaacaaag ccctttgcat ttggaggaac ttgatgctgc
     3001 tcctgacctg cgactgaggc ggtcaatgca agaagagaat gccatagcct gatgactact
     3061 gtgagttatg gaagccatgc cgatcagagg agaaagaaga taaacaaatg agaccacctc
     3121 cgtggcagcg gggcctcagg agcctcccag gagtgggttc caagcccgag gcagagagga
     3181 agctggtcca cagtgcagac agctcgatgg aagagggcat gctttacttc caacctgaac
     3241 tgctgatttt tcttccaaag caaaatactt ggaattttcc tattaaacct gttaaaatgt
     3301 tgaaatgttc cacaaacacc tgggaagagg taacctggga atattgcact tgtatcttta
     3361 agaaatatat gtctggggtt gaggatttag ctcagtggta gagtgcttgc ctagcaagcg
     3421 caaggccctg ggtttggtcc tcagctccga aaaaaaaaaa aaaaaaaaaa aaaaagaaag
     3481 aaatatatgt ctgcatggtg gagactttag gactctcttc ccagacctgg caaaggttta
     3541 gaaactggtg ctaatgataa tggttcataa tgaataaaat acatgatcgc caa
//
