LOCUS       NM_001170432            3306 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus transmembrane channel-like 3 (Tmc3), mRNA.
ACCESSION   NM_001170432
VERSION     NM_001170432.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3306)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMEA5760383, SAMEA5760389
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-89                JAXUCZ010000001.1  146961610-146961698
            90-236              JAXUCZ010000001.1  146962735-146962881
            237-312             JAXUCZ010000001.1  146968170-146968245
            313-394             JAXUCZ010000001.1  146973080-146973161
            395-501             JAXUCZ010000001.1  146975218-146975324
            502-600             JAXUCZ010000001.1  146976011-146976109
            601-743             JAXUCZ010000001.1  146976211-146976353
            744-891             JAXUCZ010000001.1  146977719-146977866
            892-935             JAXUCZ010000001.1  146978632-146978675
            936-1083            JAXUCZ010000001.1  146981146-146981293
            1084-1193           JAXUCZ010000001.1  146982588-146982697
            1194-1272           JAXUCZ010000001.1  146984947-146985025
            1273-1521           JAXUCZ010000001.1  146986150-146986398
            1522-1650           JAXUCZ010000001.1  146986934-146987062
            1651-1718           JAXUCZ010000001.1  146987800-146987867
            1719-1847           JAXUCZ010000001.1  146989198-146989326
            1848-1958           JAXUCZ010000001.1  146991675-146991785
            1959-2084           JAXUCZ010000001.1  146999052-146999177
            2085-2163           JAXUCZ010000001.1  146999934-147000012
            2164-2206           JAXUCZ010000001.1  147001371-147001413
            2207-2462           JAXUCZ010000001.1  147002949-147003204
            2463-3306           JAXUCZ010000001.1  147004945-147005788
FEATURES             Location/Qualifiers
     source          1..3306
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q31"
     gene            1..3306
                     /gene="Tmc3"
                     /note="transmembrane channel-like 3"
                     /db_xref="GeneID:293065"
                     /db_xref="RGD:1308063"
     CDS             1..3306
                     /gene="Tmc3"
                     /note="StAR-related lipid transfer (START) domain
                     containing 5; transmembrane channel-like gene family 3"
                     /codon_start=1
                     /product="transmembrane channel-like protein 3"
                     /protein_id="NP_001163903.1"
                     /db_xref="GeneID:293065"
                     /db_xref="RGD:1308063"
                     /translation="MKTSKASQRYRSIRRNASQCYLYQDSLLLGNFDDSFNADEAGDS
                     SDPEQIFQNIQFQKDLMANIRCRPWTMGQKLRALRRAKEIVLKFEGRLTRTRGYQAAG
                     AELWRKFARLACNFVVIFIPWEMRIKKIESHFGSGVASYFIFLRWLFGINIVLTVMTG
                     AFVVLPELIAGQPFGSTASKTIPQEQVMSAQDLDTVWSLGGYLQYSVLFYGYYGRERR
                     IGRAGYRLPLAYFLVGMAVFAYSFIILLKKMAKNSRTSLASASNENYTFCWRVFCAWD
                     YLIGNPEAAESKTAAILNSIREAILEEQEKKKNKNMAVTVCLRIIANILVLLSLAGSI
                     YLIYFVVDRSQKLEQSKKELTLWEKNEVGVVVSLVTMLAPSAFDLIAALEMYHPRTTL
                     RFQLARVLVLYLGNLYSLIIALLDKVNSMNIEEAATKNSTSHWADAPTFYATRTVPEE
                     GQWPTPVSGVELRRNTSMWDLEETSFLTSITPHTVANKTVSYMQGPQGQCWETYVGQE
                     MLKLSVIDMLFTVASILLIDFFRGLFVRYLSDYWCWDLESKFPEYGEFKIAENVLHLV
                     YNQGMIWMGAFFSPCLPAFNVLKLIGLMYLRSWAVLTCNVPHQQVFRASRSNNFYLAM
                     LLFMLFLCMLPTVFAIVHYKPSLNCGPFSGQEKIYDIVSETIENDFPTWFHVVVGHIS
                     SPVVILPAVLLLFMLIYYLQSIARSLKLSSQQLRMQIQNARSEDKKKVAQMVEARIQT
                     HEESSKRLLKDSDLISQLSSAYLATSHNNGNMLNFDSLSSKSLRMETITRSLPQSPGQ
                     GSRGPCSPLPDGSRSRPEQDTNRNPHGPCSSTGNLHKNRSCSSVTQTQPLKDARSEPL
                     SRKNFQPIRPPFCGSEVSALMTHGHGLRAPRYYVVNEHDSHKKTHSAFWPERHFKIDA
                     LGDIVELYPRNVGQYMSWVPHQPSSPQLSEEEEEILRRDLIQWSIPASSLTDLPRSSC
                     FYTGDRSENNTRDPKYQRRVYYRSGENSFEGQLERPIFVHKKPRPRNVQYPQHPLKAK
                     VKAKFEPSFTESDSVSAASSSDQQNSNNDQYRHVMSSQARFPRSASQLGRRKAKYRQV
                     LPTDLNDLICSNV"
     exon            1..89
                     /gene="Tmc3"
                     /inference="alignment:Splign:2.1.0"
     exon            90..236
                     /gene="Tmc3"
                     /inference="alignment:Splign:2.1.0"
     exon            237..312
                     /gene="Tmc3"
                     /inference="alignment:Splign:2.1.0"
     exon            313..394
                     /gene="Tmc3"
                     /inference="alignment:Splign:2.1.0"
     exon            395..501
                     /gene="Tmc3"
                     /inference="alignment:Splign:2.1.0"
     exon            502..600
                     /gene="Tmc3"
                     /inference="alignment:Splign:2.1.0"
     exon            601..743
                     /gene="Tmc3"
                     /inference="alignment:Splign:2.1.0"
     exon            744..891
                     /gene="Tmc3"
                     /inference="alignment:Splign:2.1.0"
     exon            892..935
                     /gene="Tmc3"
                     /inference="alignment:Splign:2.1.0"
     exon            936..1083
                     /gene="Tmc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1084..1193
                     /gene="Tmc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1194..1272
                     /gene="Tmc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1273..1521
                     /gene="Tmc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1522..1650
                     /gene="Tmc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1651..1718
                     /gene="Tmc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1719..1847
                     /gene="Tmc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1848..1958
                     /gene="Tmc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1959..2084
                     /gene="Tmc3"
                     /inference="alignment:Splign:2.1.0"
     exon            2085..2163
                     /gene="Tmc3"
                     /inference="alignment:Splign:2.1.0"
     exon            2164..2206
                     /gene="Tmc3"
                     /inference="alignment:Splign:2.1.0"
     exon            2207..2462
                     /gene="Tmc3"
                     /inference="alignment:Splign:2.1.0"
     exon            2463..3306
                     /gene="Tmc3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgaaaacct caaaggcatc ccagcgctac agaagcatcc ggagaaatgc cagccagtgc
       61 tacctctacc aggactccct gctgcttggt aacttcgacg acagctttaa tgctgacgaa
      121 gcaggagaca gcagtgatcc agaacaaatc ttccagaata tacagtttca gaaagatctc
      181 atggcaaata tccgctgcag accctggacc atggggcaga agcttcgggc actgagacga
      241 gcaaaggaga tcgtattgaa gtttgaaggc aggctgacca ggactcgagg ctaccaagca
      301 gcgggagcag agctctggcg gaaatttgcc cgtctggcct gtaactttgt ggtcatcttc
      361 atcccctggg aaatgaggat aaagaaaatc gagagtcact tcggatctgg tgtggcctcc
      421 tacttcatct tcctgaggtg gttattcggt attaacatag tgctcacggt gatgacgggt
      481 gcctttgttg tccttcctga gctaatcgca ggccagccct ttggaagcac agccagcaag
      541 accatccccc aggagcaggt catgtctgca caggatctgg acactgtctg gtccctcggg
      601 ggctaccttc aatactctgt cctgttctat ggatactacg gaagagagag gcggatcggg
      661 agagccggct accgcctgcc cttggcatat ttcctggtgg ggatggcagt gtttgcctac
      721 agcttcatca ttctcttaaa gaaaatggct aagaactccc gcaccagcct ggccagtgct
      781 tccaatgaaa actacacctt ctgctggcgg gtgttttgtg cctgggatta cctcattggg
      841 aacccagagg ctgcagaaag caaaacagct gccatcctga acagcattag ggaggccata
      901 ctggaagagc aagaaaagaa aaaaaacaaa aacatggcgg tgaccgtctg cctgagaatc
      961 attgccaaca tcctggtgct cctctcgctg gctgggagca tctatctcat ctactttgtg
     1021 gtggaccggt cccagaagct ggagcagtcg aagaaggagc tgacactttg ggaaaagaat
     1081 gaggtaggcg tggtggtctc ccttgtcacc atgctagcac catctgcctt tgacctcatc
     1141 gctgccttgg agatgtacca tccacggacg acactgcgct tccagttagc aagggtcctg
     1201 gtactgtatc taggaaatct ctacagcttg atcattgctc ttctggacaa agtgaacagc
     1261 atgaacattg aggaagctgc tactaaaaac agcacaagcc actgggcaga tgctcccacc
     1321 ttctatgcca ccaggacagt gcctgaagaa gggcagtggc ccacacctgt gtcaggggtg
     1381 gagctcagga gaaacaccag catgtgggac ttggaagaga caagctttct gacttctatc
     1441 acaccacaca cagtagccaa caagacagtg tcctacatgc agggcccaca aggccagtgc
     1501 tgggagacat acgtcggcca ggagatgctg aagctgtctg tcattgacat gctcttcact
     1561 gtggccagca tcctcctcat agacttcttc cgaggacttt ttgttcgcta cttaagtgac
     1621 tattggtgtt gggaccttga aagcaagttt cctgaatatg gagaattcaa gattgctgag
     1681 aatgtgctgc atcttgtcta caatcaaggc atgatttgga tgggggcctt cttctctccg
     1741 tgtctgccag cattcaatgt tctcaagctc attgggctga tgtacctgag gagctgggca
     1801 gtgctgacct gcaatgtacc ccaccagcaa gtgtttcgag cttccagatc caacaacttc
     1861 tacctggcaa tgctcctgtt catgctgttc ctctgcatgc tgccaactgt ctttgcgatt
     1921 gtccactaca agccgtccct gaactgcggc cccttcagcg gacaagagaa aatttatgac
     1981 atcgtgtcag agacgataga gaatgacttc cccacgtggt ttcacgtcgt tgttggacac
     2041 atcagcagcc ccgtggtgat actcccagct gtgctgcttc tgttcatgct catctactac
     2101 cttcagagca tcgcgagatc actcaagctc agcagccagc aactcaggat gcagatccaa
     2161 aacgcgagat cagaagataa gaaaaaagtt gcccaaatgg tagaggctcg aatccagact
     2221 catgaagaaa gcagcaagag gcttctaaag gacagtgacc ttatcagcca gctgtcctct
     2281 gcatacctgg caacatccca taacaatggc aacatgctca actttgactc tctgagtagc
     2341 aagagcctca ggatggagac aattacaagg tccctgcccc agagtcctgg acaagggtcc
     2401 agaggcccct gctctcctct tccagatgga tccagatcaa gaccagagca ggacaccaat
     2461 aggaatccac acgggccgtg ttccagcaca ggcaacctcc acaagaacag atcctgctca
     2521 tctgtcacac aaacacagcc cctcaaagat gctcgctcag agcccctttc cagaaaaaac
     2581 tttcagccaa tccgtcctcc tttctgtgga tctgaagtct ctgccttgat gacacatggc
     2641 cacggtctcc gtgctcccag atactatgtc gtcaatgagc atgactctca caaaaagacc
     2701 cactcagctt tctggccaga aagacatttc aagatagatg ctttaggtga cattgttgag
     2761 ttgtacccca ggaatgtagg gcagtacatg tcctgggttc cccaccagcc ttcttctcca
     2821 cagctgagtg aagaagagga ggagatactg agaagagatt tgatccagtg gtcaatccct
     2881 gctagctccc tgacagacct ccctcggtct tcttgttttt acactggtga cagatcagaa
     2941 aataacacca gagaccctaa gtaccagcga agggtgtact acagatctgg ggaaaatagt
     3001 tttgaaggcc agcttgagag gccaatattt gtacacaaaa agccacgacc cagaaatgtc
     3061 caatacccac agcatcccct gaaggccaaa gtcaaagcta agttcgaacc atcgttcaca
     3121 gaatctgatt ctgtgtcagc agcctccagc agtgaccagc aaaacagcaa caatgaccaa
     3181 tacaggcatg tcatgtccag ccaggcaaga ttccccaggt ctgccagcca gctgggcagg
     3241 aggaaggcca agtacaggca ggtactgccc acagatctaa atgacctaat ttgttcaaat
     3301 gtctag
//
