LOCUS       NM_001169102             953 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus translation machinery associated 16 homolog
            (Tma16), mRNA.
ACCESSION   NM_001169102 XM_001073162 XM_214332
VERSION     NM_001169102.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 953)
  AUTHORS   de Mateo,S., Castillo,J., Estanyol,J.M., Ballesca,J.L. and Oliva,R.
  TITLE     Proteomic characterization of the human sperm nucleus
  JOURNAL   Proteomics 11 (13), 2714-2726 (2011)
   PUBMED   21630459
REFERENCE   2  (bases 1 to 953)
  AUTHORS   Shultz,M.A., Zhang,L., Gu,Y.Z., Baker,G.L., Fannuchi,M.V.,
            Padua,A.M., Gurske,W.A., Morin,D., Penn,S.G., Jovanovich,S.B.,
            Plopper,C.G. and Buckpitt,A.R.
  TITLE     Gene expression analysis in response to lung toxicants: I.
            Sequencing and microarray development
  JOURNAL   Am J Respir Cell Mol Biol 30 (3), 296-310 (2004)
   PUBMED   12947022
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CF109688.1, JAXUCZ010000016.1 and BI294760.1.
            
            On or before Dec 16, 2009 this sequence version replaced
            XM_001073162.1, XM_214332.3.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CF109688.1, SRR22582416.1723723.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-631               CF109688.1         36-666
            632-846             JAXUCZ010000016.1  28019005-28019219
            847-953             BI294760.1         1-107               c
FEATURES             Location/Qualifiers
     source          1..953
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16p14"
     gene            1..953
                     /gene="Tma16"
                     /gene_synonym="RGD1305222"
                     /note="translation machinery associated 16 homolog"
                     /db_xref="GeneID:290686"
                     /db_xref="RGD:1305222"
     exon            1..48
                     /gene="Tma16"
                     /gene_synonym="RGD1305222"
                     /inference="alignment:Splign:2.1.0"
     CDS             46..711
                     /gene="Tma16"
                     /gene_synonym="RGD1305222"
                     /codon_start=1
                     /product="translation machinery-associated protein 16"
                     /protein_id="NP_001162573.1"
                     /db_xref="GeneID:290686"
                     /db_xref="RGD:1305222"
                     /translation="MPKGLKAKMVGREKKVIHPYSRKAAQITRESHKQDKKERLKTER
                     ALRLNLIGDKLQWFHSHLDTKKSRYSKKDACELIERYLDRFSSELEQIELHNSIKDRQ
                     GRRHHSREAVIKQTMERERQQYEGYGFEIPDIVDSNALNTFREWDFDLKKLPNIKMRK
                     LCANDAVPKKRKQKNILNIEKDLGELDLTGETGDATDGKLEPASESSDTDEEMTAVPD
                     SPH"
     exon            49..161
                     /gene="Tma16"
                     /gene_synonym="RGD1305222"
                     /inference="alignment:Splign:2.1.0"
     exon            162..199
                     /gene="Tma16"
                     /gene_synonym="RGD1305222"
                     /inference="alignment:Splign:2.1.0"
     exon            200..284
                     /gene="Tma16"
                     /gene_synonym="RGD1305222"
                     /inference="alignment:Splign:2.1.0"
     exon            285..433
                     /gene="Tma16"
                     /gene_synonym="RGD1305222"
                     /inference="alignment:Splign:2.1.0"
     exon            434..476
                     /gene="Tma16"
                     /gene_synonym="RGD1305222"
                     /inference="alignment:Splign:2.1.0"
     exon            477..936
                     /gene="Tma16"
                     /gene_synonym="RGD1305222"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgtcgcatct ggatatcgcg gggcctcggt ggccaggaca tcgccatgcc taaaggactg
       61 aaagcaaaaa tggtaggacg ggaaaaaaaa gtcatccatc cgtacagtag aaaagcagct
      121 cagattacaa gggagtctca caaacaagac aagaaggaaa gattgaagac ggagagggcc
      181 ttgcgtctca accttattgg tgacaaactt cagtggtttc acagtcatct ggatacaaaa
      241 aaatcgagat attcaaagaa agatgcctgt gaattaattg aaaggtactt ggatcggttc
      301 agcagtgagc tggagcagat tgagttacac aacagcatca aggacagaca ggggaggcgg
      361 caccattccc gggaggctgt catcaagcag accatggagc gggagcggca gcagtatgaa
      421 ggctacggct ttgagatccc agacatcgta gactctaatg ctctgaacac tttccgggaa
      481 tgggattttg atctgaagaa attgccaaac atcaaaatga ggaaactgtg tgctaatgat
      541 gcggttccta agaagcgcaa acagaaaaat attttaaata tagaaaagga tttaggagaa
      601 ttagacctaa caggggaaac tggagatgct acagatggaa aactggaacc agcaagtgaa
      661 tcaagtgaca cggatgaaga aatgactgca gtgcctgaca gccctcattg acgtacatga
      721 gatgcctcat gtcctactct ctgactatag cagatatcat ttctgtgtgg gctgctgaga
      781 tggctcagca agagggggct tgcagccaag cctgattgtc aaagtttgtt tctgagaatc
      841 catggattag acagaacaag ttttcttcta atgtctacat gcacactatg ggaagtacgc
      901 gtgtgcacac acaaataaag tttgtaatta tctgtaaaaa aaaaaaaaaa aaa
//
