LOCUS       XM_006231413            6382 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transmembrane 9 superfamily member 3
            (Tm9sf3), mRNA.
ACCESSION   XM_006231413
VERSION     XM_006231413.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 3, 2024 this sequence was replaced by
            NM_001427812.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6382
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6382
                     /gene="Tm9sf3"
                     /note="transmembrane 9 superfamily member 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 261 ESTs, 9 long SRA reads, 9 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 241 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:309475"
                     /db_xref="RGD:1564625"
     CDS             407..2170
                     /gene="Tm9sf3"
                     /codon_start=1
                     /product="transmembrane 9 superfamily member 3"
                     /protein_id="XP_006231475.1"
                     /db_xref="GeneID:309475"
                     /db_xref="RGD:1564625"
                     /translation="MRPLPGAPGVAAAAALLLLLLPRARSDEHEHTYQDKEEVVLWMN
                     TVGPYHNRQETYKYFSLPFCVGSKKSISHYHETLGEALQGVELEFSGLDIKFKDDVMP
                     GTYCEIDLDKEKRDAFVYAIKNHYWYQMYIDDLPIWGIVGEADENGEDYYLWTYKKLE
                     IGFNGNRIVDVNLTSEGKVKLVPNTKIQMSYSVKWKKSDVKFEDRFDKYLDPSFFQHR
                     IHWFSIFNSFMMVIFLVGLVSMILMRTLRKDYARYSKEEEMDDMDRDLGDEYGWKQVH
                     GDVFRPSSHPLIFSSLIGSGCQIFAVSLIVIIVAMIEDLYTERGSMLSTAIFVYAATS
                     PVNGYFGGSLYARQGGRRWIKQMFIGAFLIPAMVCGTAFFINFIAIYYHASRAIPFGT
                     MVAVCCICFFVILPLNLVGTILGRNLSGQPNFPCRVNAVPRPIPEKKWFMEPAVIVCL
                     GGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMMLVLVILCIVTVCVTIVCTYFLLNAE
                     DYRWQWTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGYMAVFSTALGIMCG
                     AIGYMGTSAFVRKIYTNVKID"
ORIGIN      
        1 cggcgagcta ggcgtctgag ctgacgtctc gctagcctgc cggcagcggg ctgcttcagc
       61 tcgcacgcgc gagggcctaa gccgaggctg agcgagtagc ccggcagcgg gtgcggaacc
      121 cttcaacacc gcggactgcg cgcgccggcg ccccacggcg ggcgacggtt gcggccccgc
      181 gttgggagga cttccggcgt gtgccggggt ggccggatga cgtggctgag tcagaggaag
      241 aggctcggag gccggggggc gggggcggcg cggagcgggc ggtgacggcg gcggaggcag
      301 cggctgggcc cgggccccgt gcgtctgtcc gcgcccggtg gatgtgaatc ggcggcggcg
      361 gcggaggagt cggtgggccg gcgcccagcc tgtgggagcg cggagaatga ggccgctgcc
      421 gggcgctcct ggcgtggcgg cggccgccgc gttgttgctg ctgctgttgc cccgggctcg
      481 gtctgacgag cacgaacaca cgtatcaaga taaagaagaa gttgttttat ggatgaatac
      541 tgttggtccc taccacaatc gccaagaaac atataaatac ttttcacttc cattttgtgt
      601 ggggtcaaaa aaaagtatca gtcattacca tgaaactttg ggagaagcac ttcaaggagt
      661 tgaattagaa tttagtggcc tggatattaa atttaaagat gatgtgatgc caggtactta
      721 ctgtgaaatt gacttagata aagagaagag agatgcattt gtgtatgcta tcaagaatca
      781 ctattggtat cagatgtaca tagatgactt accaatatgg ggtattgttg gtgaagcaga
      841 tgaaaatggg gaagattact atctttggac ctacaaaaaa cttgaaatag gctttaatgg
      901 taatcgaatt gttgatgtta atctaactag tgaaggaaag gtcaaactgg ttccaaatac
      961 taaaatacag atgtcatact cggtaaaatg gaaaaaatca gatgtaaaat ttgaagatcg
     1021 atttgataaa tatcttgatc catccttttt tcaacacagg attcactggt tttcaatttt
     1081 taattccttc atgatggtga tcttcttagt gggattagtt tcaatgattt taatgagaac
     1141 tttaagaaaa gattatgccc gatacagtaa agaagaagaa atggatgaca tggaccgaga
     1201 cctgggagac gagtatggct ggaagcaagt gcatggagat gtgttccgac cgtcaagcca
     1261 ccctctgata ttctcctccc tcattggctc tgggtgtcag atatttgctg tgtctctcat
     1321 tgttattatt gttgccatga tagaggactt atacacagag aggggatcaa tgctcagtac
     1381 agccatattt gtctatgctg ctacatctcc agtgaatggg tactttggag gaagtctgta
     1441 cgctagacaa ggaggaaggc gatggataaa gcagatgttt atcggggcgt tcctaatccc
     1501 agccatggtg tgcggcactg cgttcttcat caactttata gccatttact accacgcctc
     1561 tagagccatt ccttttggaa caatggtggc cgtttgttgc atctgttttt ttgtcatcct
     1621 tcctctaaat ctcgttggta caatactggg ccgcaatctg tcaggtcagc ccaacttccc
     1681 ttgtcgtgtc aatgctgtgc ctcgtcctat cccggagaaa aaatggttca tggagcctgc
     1741 agttattgtt tgcctgggag gaattttacc ttttggctca atctttattg aaatgtactt
     1801 catcttcacg tccttctggg catataagat ctactatgtc tatggtttca tgatgctggt
     1861 gctggtcatc ctgtgcattg tgactgtctg tgtgaccatc gtctgcacat acttcctgct
     1921 aaatgcagag gactataggt ggcaatggac aagtttcctc tctgctgcat caactgcaat
     1981 ctatgtttac atgtattcct tttactacta ttttttcaaa acaaagatgt atggcttatt
     2041 tcaaacatca ttttactttg gatatatggc ggtatttagc acagccttgg ggataatgtg
     2101 tggagcaatc ggttacatgg gaacaagtgc ctttgttcga aaaatctata ctaatgtgaa
     2161 aattgactag acacctgaga cagcctggaa cttcggatca gtttctcttt cacgagggtg
     2221 gaacttgcac agaaaagaag aataattgca agaagagatt tgggcttaac actgggtact
     2281 ttgtgggtct ctgttgtgga tggcttcaag taacatctgt ttccattgat cctaggttct
     2341 tactgactgc tttctccaac tgttcacagc agatgcttgg attttatgca gtaggcttta
     2401 ctacagtaca tggctaatct tccccaaact agctcattaa agatgaaata gaccagctct
     2461 cttcagtgaa gaggacaaat agtttattta aagcatttgt tccaataaaa taactagagg
     2521 gaaactcgga tgctaaaatt ccatacgcag aaatcttcct ggcacttggt gtttctatgt
     2581 attgaaaaat gatgttccag aaagattact ttttctctta tttttactgc cattgttgat
     2641 gtgctgtggg acgtttttat atattgaacc tgggttcttt ttgacctgtt ttggtcgtcc
     2701 ctccattcaa ctgcatcttt tttttttaaa caaattaaaa actattaaat tctgcatgga
     2761 atatatctgc tgtcatctta atcttagttg gatcaatctc atttatttat cttaaaatta
     2821 accagctttc tcaattccat ccaaagaaga tacagtatga aaatagagat gtactctcta
     2881 taatacaatt tactgtacag ttaacaagca aggtgttaaa tggagaagat gcttgttttt
     2941 attaaacatt tggagattta gataatttac attttaactg aatgtctaaa gtgattatct
     3001 tcccctccct acccccaagt tagtcttaca tccttttttt tttttttttt tggggtttca
     3061 atgaaggctt tacataagaa attattaaaa aaaccaaggg gggcaataaa tgtatataac
     3121 attaataatg tcttgtaggt gtaggttccc ggatgcattt ggatgtacag attgactgga
     3181 ggactcttcg gggtgatgac tggtgtagaa acagatgggt ttgggtggcc ttctacatct
     3241 tgcctaccat tgcatgaaac attggggttt cttcagaatg tgtgtgtcat acttcttttg
     3301 ggagggggtt gttttcttct tttatgaaac tcctactgga gctaaatttg taatttagaa
     3361 acatttaatt ttgttaatcc tgtctgggac atttaagtaa catctgaagc attcttgctt
     3421 tagaatgttc aaataaaatt tcctgaccaa attgttttgt gacagtagat gtgtttataa
     3481 tttgaagaac ctgctcagaa ggccacatca tagaatccaa tttttaaaaa ataaaatata
     3541 aagcatactt tttaaatata gaggacacct attaaaatcc ccagactcag agccaggtgt
     3601 gatagttgat gcctataatc gtaggaccac gggaggtaag gcggaaggaa gcttgtgatg
     3661 aatttgagaa cgggctcgag agtgagttac tgctcactct gagttctgtt ctactctaga
     3721 agacaccgct tcaggagaaa aaaaaacaaa gtgaatgctt ggctacatac agttagaaag
     3781 tataagtatc tttttttata taaaattgtg acatacaagt ctgaacattc attggattgc
     3841 tgtgccatgt aaagtagaag ggaccgtaat gttagctcat ttaatgggtg ataaataaag
     3901 gctacagtaa tctcaaagaa attattttca tttgcacata tattttcagg atctgcccat
     3961 attgtgaagt tttcctagaa ccattgagtt tctgctttag tagtttgctc tgcagattcc
     4021 caaaactcta ctgtatattg atggttttag aaagacttgg gtcatctgtg ttacacttcg
     4081 tgtgaaacat gcattcatgg ttacatgact tatttctata aatcaatgga ctctgtgtct
     4141 taagctgagg catgtgacat ctttagggtg tggggtaaga gctgtaagca gtgtgaatag
     4201 agctatggtc agtcatcttt aacccagaat cttgggttca atgtcaccta ctaattctta
     4261 tttctgtttc ttgcctgacc ttatggtctt gataaagagc actgtttgtt tattctgtgt
     4321 aacttttaaa cattagtcta catgctgggg gtgtagtcta catgctgggg gtgtagtcta
     4381 catgctgggg gtgtagctca gcgcttgctc agcttatata aaactgggct tcagccccac
     4441 actgtgtaaa ctgggcgtga cagcgtgtgt ttgcaatcct agtgttcagc aggtagaggc
     4501 agggggatca gaagtgcaaa ggtaccctca gctacatagt gtcaggactg tcttgcacga
     4561 tatgacattc tattctaaaa acgaggcaac actctctgtc taatagagta tacataagtt
     4621 ggacagctag tttttgcctt aataaaatgt ttttcataat catatgcagg taaggtgtgg
     4681 ggttttcaga gaacatggag gtttcaggtg cacatatttg ttctgctgtg tttaggtgga
     4741 actctggagt tctttgaagt ctgcaatgaa aaataatttt taaatgtatt aagagcatta
     4801 aaatggatat aaattgcttt gaaagatcct ttataaaatg acttgtattg attggtttat
     4861 aatttcacac aggggtgaca taaatgtata ccttgaaaaa gatgtaggtc gcaggtgact
     4921 tagctctcac tagttctcgg ttagtagaat agttcaaaca atatcactta tgttaattag
     4981 gatgggcttt tgtactccat taatgctgta tttagtttac taatatctgc tcagtttgtc
     5041 agctgatagt ttgaatatta tcaaaaacta agaacatact ttgtatcttt aagcatgctt
     5101 cctgaatatt aattacacta gaaactggca tccttatgct ggcctcccaa gtacaaaagc
     5161 aggaaaaagc agtaaggagc tgactagaga gatgctcaag tgtgctagtg tattgtgtag
     5221 actcccagac caccgcaatg gtttgtggag aaacccatgc ccgtagaatc attgtatgtg
     5281 ctgtgtgtgc ctcacggctg gtgtacttgt gtgtttccac tagcgatggg tggccctctt
     5341 tctaacggta gttgctgcag attccagttc ttccgaaagc tcttgtttta agggtttatc
     5401 cacaagttgt gctcattttg ataaagcatt tgtttcctaa atgtttacta atcactctat
     5461 gccaaatgtc ctgcagaggt tatttttaaa cttactgaat ttttacaagt ataaaaagga
     5521 aaaagtatat taatgtaatt tgtttaggaa tagctacata ccgaagggct tctatatgtg
     5581 aattctatgg gcaaaagcct tttgtagaaa cctacatctg ggttttaagt tgagatgtga
     5641 acattttagt gcttctccct ctccctctcc ctctccctct ctctctctct ctctctctct
     5701 ctctctctct ggaacatgtg agaggaggag gatgtgcaga agcacagatg ttcatgtttt
     5761 ctctcatgta tgattctgta gctaagctgt gtgttagtga aggtgttagc gatcggagga
     5821 ttggtattga agtattgaag actagactag aaatctaggg tagaacagaa gaggggcaca
     5881 cacctgcaca tgttctgcat gccttacggt ctagatgagc atgcctaaag gctgcctcat
     5941 ttaacgtccc tcctgtgtgc agtgtgcaaa ggtcagaact tatttcacag ttaggtggac
     6001 taggcgaggc acagtttgtg attacccctc actagcttag gttgtttgca aatttataaa
     6061 tgctgtaagt tggagctaaa tgtcaggaga taaaaggttc tctgaaggac agcagagttt
     6121 ttctgtacaa acagtctcat ttgggcttct catctgtgct caccttgaac ctacaacctc
     6181 catgggcagt cagcaggtgg gaagacatgg tgttcgccct tgtgacttcc attttataca
     6241 cactgggttt gtgtattcca gttggctttt tagtactaga aatccctcat atgatgtatc
     6301 agacacaatt gaattctaat ctagtctgtt aatttatcta aagttggagt ttttttttta
     6361 aagtaataaa aaattaaatg ta
//
