LOCUS       NM_001005554            2812 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus transmembrane 9 superfamily member 2 (Tm9sf2),
            mRNA.
ACCESSION   NM_001005554 XM_224551
VERSION     NM_001005554.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2812)
  AUTHORS   Gonzalez-Begne,M., Lu,B., Han,X., Hagen,F.K., Hand,A.R.,
            Melvin,J.E. and Yates,J.R.
  TITLE     Proteomic analysis of human parotid gland exosomes by
            multidimensional protein identification technology (MudPIT)
  JOURNAL   J Proteome Res 8 (3), 1304-1314 (2009)
   PUBMED   19199708
REFERENCE   2  (bases 1 to 2812)
  AUTHORS   Ross,M.E., Zhou,X., Song,G., Shurtleff,S.A., Girtman,K.,
            Williams,W.K., Liu,H.C., Mahfouz,R., Raimondi,S.C., Lenny,N.,
            Patel,A. and Downing,J.R.
  TITLE     Classification of pediatric acute lymphoblastic leukemia by gene
            expression profiling
  JOURNAL   Blood 102 (8), 2951-2959 (2003)
   PUBMED   12730115
REFERENCE   3  (bases 1 to 2812)
  AUTHORS   Diaz,E., Schimmoller,F. and Pfeffer,S.R.
  TITLE     A novel Rab9 effector required for endosome-to-TGN transport
  JOURNAL   J Cell Biol 138 (2), 283-290 (1997)
   PUBMED   9230071
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC081873.1.
            
            On Oct 8, 2004 this sequence version replaced XM_224551.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC081873.1, SRR8487231.175782.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2812
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /map="15q25"
     gene            1..2812
                     /gene="Tm9sf2"
                     /note="transmembrane 9 superfamily member 2"
                     /db_xref="GeneID:306197"
                     /db_xref="RGD:1359230"
     exon            1..336
                     /gene="Tm9sf2"
                     /inference="alignment:Splign:2.1.0"
     CDS             166..2157
                     /gene="Tm9sf2"
                     /codon_start=1
                     /product="transmembrane 9 superfamily member 2 precursor"
                     /protein_id="NP_001005554.1"
                     /db_xref="GeneID:306197"
                     /db_xref="RGD:1359230"
                     /translation="MSSRPPASLPARGPRLLLLSLLLLGTVPGPRPGSAFYLPGLAPV
                     NFCTEEKKSNECKAEIELFVNRLDSVESVLPYEYTAFDFCQASEGKRPSENLGQVLFG
                     ERIEPSPYKFTFNKEETCKLVCTKTYHTEKAEDKQKLDFLKKSMLLNYQHHWIVDNMP
                     VTWCYEVEDNQKFCNPGFPIGCYITDKGHAKDACVISSEFHERDTFYIFNHVDIKIQY
                     HVVETGSMGARLVAAKLEPKSFRHTHIDKPDCSGPAMDISNKASGEIKIAYTYSISFE
                     EEKNIRWASRWDYILESMPHTHIQWFSIMNSLVIVLFLSGMVAMIMLRTLHKDIARYN
                     QMDSTEDAQEEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVTLFFACLGFLS
                     PANRGALMTCAVVLWVLLGTPAGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFF
                     IMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEHPVRTNQIP
                     RQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILV
                     ITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLVYAIHYFFSKLQITGTASTI
                     LYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD"
     exon            337..404
                     /gene="Tm9sf2"
                     /inference="alignment:Splign:2.1.0"
     exon            405..498
                     /gene="Tm9sf2"
                     /inference="alignment:Splign:2.1.0"
     exon            499..626
                     /gene="Tm9sf2"
                     /inference="alignment:Splign:2.1.0"
     exon            627..756
                     /gene="Tm9sf2"
                     /inference="alignment:Splign:2.1.0"
     exon            757..881
                     /gene="Tm9sf2"
                     /inference="alignment:Splign:2.1.0"
     exon            882..993
                     /gene="Tm9sf2"
                     /inference="alignment:Splign:2.1.0"
     exon            994..1073
                     /gene="Tm9sf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1074..1182
                     /gene="Tm9sf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1183..1315
                     /gene="Tm9sf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1316..1435
                     /gene="Tm9sf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1436..1493
                     /gene="Tm9sf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1494..1653
                     /gene="Tm9sf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1654..1805
                     /gene="Tm9sf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1806..1917
                     /gene="Tm9sf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1918..2089
                     /gene="Tm9sf2"
                     /inference="alignment:Splign:2.1.0"
     exon            2090..2773
                     /gene="Tm9sf2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cttcggtttc tgtcgcgggg ccggtggtgt ctcctagcgt aaccggaact agccgttgcg
       61 ggccggcctt ctctgcgctc gggccttgag gtgatctccg aggcccccgc ccctcctccc
      121 tcgtcgtccc ctcggctcgg ccgccctcct ttcacagccg ccggcatgag ctccaggccg
      181 cccgcgtcgc tgccagcgcg aggcccgcgg ttgttgctgc tgtcgctgct cttgctaggg
      241 acggtcccag gcccgcgccc gggcagcgcc ttctacctgc ctggcctggc tccggtcaat
      301 ttctgcaccg aagagaagaa gagcaacgag tgcaaggctg agatagaact gtttgttaac
      361 cggcttgatt cagtggagtc tgttcttcct tatgaatata cagcgtttga tttttgccaa
      421 gcatcagaag gaaaacgccc atctgaaaat cttggtcagg tattattcgg ggaaagaatt
      481 gaaccctcac catacaagtt tacatttaat aaggaggaaa cctgtaaact cgtttgtacg
      541 aaaacatacc atacagagaa ggctgaagac aaacagaagt tagacttctt gaaaaaaagc
      601 atgctactga actatcagca tcactggatt gtggataata tgcctgttac gtggtgctat
      661 gaggttgaag acaatcagaa gttctgtaat cctggatttc ctattggctg ttacattaca
      721 gataaaggcc atgcgaaaga tgcctgtgta attagttcag aattccatga gagagacact
      781 ttctacatct tcaatcatgt tgacatcaag atacaatatc acgttgttga aactgggtcc
      841 atgggagcga gattagtggc tgctaaactc gaaccaaaaa gcttcagaca tacccatata
      901 gataaaccag actgctctgg acccgccatg gatataagca acaaggcttc tggggagatc
      961 aaaattgcct atacttactc tattagtttt gaggaagaga aaaacatcag gtgggcctcc
     1021 agatgggact acattctgga gtctatgcct cacactcaca ttcaatggtt tagcataatg
     1081 aattccttgg tgattgtcct cttcttgtct ggaatggtag ctatgattat gttacgcaca
     1141 ctacataaag atattgccag atataaccag atggactcta cggaggatgc ccaggaagaa
     1201 tttggctgga aactcgttca tggggatata ttccgtcctc caagaaaggg gatgctgctg
     1261 tctgtctttc taggatctgg aacacagatt ttaattatga cttttgtaac tctatttttc
     1321 gcatgtctgg gattcttgtc ccctgccaat cgaggagccc tgatgacgtg tgctgtggtc
     1381 ttgtgggtgc tactgggcac acctgctggc tatgttgctg ccagattcta caagtccttt
     1441 gggggcgaga agtggaaaac aaatgtttta ttgacatcct tcctttgtcc tgggattgtg
     1501 tttgctgact tctttatcat gaatctgatc ctctggggag agggctcttc agcagcgatt
     1561 ccttttggca ccctggttgc catcttggcc ctctggttct gcatatctgt gcctttgacg
     1621 tttattggtg catattttgg ctttaagaag aatgccattg aacacccagt tcgaaccaat
     1681 cagattcctc gtcagattcc cgagcagtcc ttctacacca agcctttgcc cggcatcatc
     1741 atggggggca ttttgccctt cggctgcatc tttatacagc ttttcttcat tctcaacagc
     1801 atttggtcac accagatgta ttacatgttt ggcttcctgt ttctggtgtt tatcattttg
     1861 gttattacat gctcggaggc aaccatactt ctttgctatt ttcatctatg tgcagaggat
     1921 taccattggc agtggcgttc cttcctcacc agcggcttca cggcagtgta tttcctcgta
     1981 tacgccatac actacttctt ttcaaaactg cagatcacgg gaacagcaag tacaatcctg
     2041 tactttggtt acactatgat aatggtcttg atcttcttcc tttttacagg aacaattggc
     2101 ttctttgcat gcttttggtt tgtcaccaaa atatacagtg tggtgaaggt cgactgaaga
     2161 aacccagtgt gtccagttaa aacaaataaa ctaaatcttc atccacaaag acctgttttg
     2221 tgactccctt gagttttctc agacttatgg cctagtaatc cttcagaaac agcagacttc
     2281 caagtacacc tctccccatg cgcctgtccc tacctacaag atgtatttca acactaaagc
     2341 atttgtattg tgattggatt aagtatatat tcagttgttc tcagtgaaga gcaaatttaa
     2401 atattatgtg catttgtaaa tacggtagct ataaactttt caatacttct aatggcagat
     2461 tagaggaggc cataatactg acgatactgg acagtcgatt gtacataggg ttttctagac
     2521 tcggtaggtg gaaagaatta tttttctttg aaggaaataa ctttttatca tggtaatttt
     2581 gaaggatgat tcctatgatg tgttcattgg ggggatgtgg cttttaaaaa tcttgtattg
     2641 gttgtaattg ttcatatctt cttacttttc tgtgttgact tcattattcc catggtattg
     2701 gccttttaaa ctatgtgcct ctgagtcttt ggatttataa atttgttatc ttaataaata
     2761 ttgtaaaaat gccaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aa
//
