LOCUS       NM_001399706            2523 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus transmembrane 9 superfamily member 1 (Tm9sf1),
            transcript variant 3, mRNA.
ACCESSION   NM_001399706
VERSION     NM_001399706.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2523)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000015.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360190.1044031.1,
                                           SRR26360186.2087860.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760400,
                                           SAMEA5760433 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-771               JAXUCZ010000015.1  33104297-33105067   c
            772-1393            JAXUCZ010000015.1  33102715-33103336   c
            1394-1579           JAXUCZ010000015.1  33102275-33102460   c
            1580-1853           JAXUCZ010000015.1  33099354-33099627   c
            1854-2523           JAXUCZ010000015.1  33097541-33098210   c
FEATURES             Location/Qualifiers
     source          1..2523
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /map="15p13"
     gene            1..2523
                     /gene="Tm9sf1"
                     /note="transmembrane 9 superfamily member 1"
                     /db_xref="GeneID:361043"
                     /db_xref="RGD:1307085"
     exon            1..771
                     /gene="Tm9sf1"
                     /inference="alignment:Splign:2.1.0"
     CDS             427..2247
                     /gene="Tm9sf1"
                     /note="isoform 1 precursor is encoded by transcript
                     variant 3"
                     /codon_start=1
                     /product="transmembrane 9 superfamily member 1 isoform 1
                     precursor"
                     /protein_id="NP_001386635.1"
                     /db_xref="GeneID:361043"
                     /db_xref="RGD:1307085"
                     /translation="MTVLGHPRSWSCHCLPVLILLLGIGHGPRVEGVTHYKPGDPVIL
                     YVNKVGPYHNPQETYHYYQLPVCCPEKIRHKSLSLGEVLDGDRMAESLYEIRFRENVE
                     KRILCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIRGFVGYMEESGFLPHSHKIGLW
                     THLDFHLEFHGDRIIFANVSVRDVKPHSLDGLRSDELLGLTHTYSVRWSETSVEHRSD
                     RRRADDGGFFPRTLEIHWLSIINSMVLVFLLVGFVAVILMRVLRNDLARYNLDEETSS
                     GGSSDDFDQGDNGWKIIHTDVFRFPPCRGLLCAVLGVGAQFLALGTGIIVMALLGMFN
                     VHRHGAINSAAILLYALTCCISGYVSSHFYRQIGGERWVWNIILTTSLFSVPFFLTWS
                     VVNSVHWANGSTQALPVTTILLLLTVWLLVGFPLTVIGGIFGKNNASPFDAPCRTKNI
                     AREIPPQPWYKSTVIHMTVGGFLPFSAISVELYYIFATVWGREQYTLYGILFFVFAIL
                     LSVGACISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQT
                     VEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD"
     exon            772..1393
                     /gene="Tm9sf1"
                     /inference="alignment:Splign:2.1.0"
     exon            1394..1579
                     /gene="Tm9sf1"
                     /inference="alignment:Splign:2.1.0"
     exon            1580..1853
                     /gene="Tm9sf1"
                     /inference="alignment:Splign:2.1.0"
     exon            1854..2523
                     /gene="Tm9sf1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aggtcctcac caggtctact gctccggcgc cgctgtctgg aagagccggg cagaagccca
       61 agggcagcta cggggccctg tgaggccact ggcgcctctt tggccagccg gtacctcgca
      121 gagaggaccc cggagctgcg gcgggtgccc cttccggagc agcgagcccg ccgggcgttg
      181 ctatagaaac gggttggcaa gcgcagcccc gggcggggga ggcctagagg cgtgaaccct
      241 aggttgggag tactattgag tgcacgccaa gtcttcggag tagaagtcct gtggtgtggg
      301 gatccggagg ccaatgggag gaggtggagc caatgggcac ttgagagacc agaccccggg
      361 caccatgatt tgattcctag tttctgtaac cacaggattc ccccaacagg ttctgctgcc
      421 ttaaggatga cagtcctagg gcaccctcga agttggagct gccattgttt gccagtcctg
      481 atactgttgc tgggcatagg ccacgggcca cgggtggaag gtgtcacaca ctacaagccc
      541 ggcgaccctg tcattctata tgtcaacaaa gtgggaccct accataaccc tcaggaaact
      601 taccactact accagcttcc agtctgctgt ccggagaaga tccgacacaa aagtcttagt
      661 ttgggtgaag tactggatgg ggaccgaatg gccgaatctt tgtacgagat ccgctttcgg
      721 gagaatgtgg agaagagaat tctgtgccac atgcagctca gttctgcgca ggtggagcag
      781 ctgcgccagg ccattgagga attgtattac tttgagtttg tggtagatga cttgccaatc
      841 cgtggttttg tgggctacat ggaagagagt ggcttcctgc cgcacagcca caagataggc
      901 ctctggacac atttggactt ccacctagaa ttccatggag atcgaattat atttgccaat
      961 gtttcagttc gggatgtcaa gccccatagc ttggatgggc tacggtctga cgaattactg
     1021 ggccttactc acacttacag tgtacgctgg tctgagacgt cagtggagca tcggagtgat
     1081 aggcgccgag ctgatgatgg tggtttcttt cctcgaaccc tggaaatcca ttggttgtcc
     1141 atcatcaact ccatggtgct tgtgttttta ctggtgggtt ttgtggctgt tattctaatg
     1201 cgtgtgcttc gaaatgacct ggctcggtac aacctagatg aagagaccag ctctggaggc
     1261 tctagtgatg actttgacca gggtgataat ggctggaaaa ttatccatac agatgtcttc
     1321 cgcttccctc catgtcgtgg tctactctgt gctgtgcttg gtgtgggcgc ccagttcctg
     1381 gcccttggca ctggcatcat tgtcatggcg ttgctgggca tgttcaatgt acaccgtcat
     1441 ggagccatta actcagcagc aatcttgttg tatgccctga cctgctgcat ctctggctac
     1501 gtgtccagcc acttctaccg gcaaatcgga ggcgagcgat gggtatggaa catcattctc
     1561 accaccagtc tcttctctgt gcctttcttc ctgacctgga gtgtggtgaa ctcagtgcac
     1621 tgggccaacg gttcgacaca ggctctaccg gttacaacca tcctgctgct tctgacagtt
     1681 tggctgctgg taggctttcc tctcactgtc attggaggca tcttcgggaa gaacaacgct
     1741 agtccttttg atgcaccttg tcgcacgaag aatatcgccc gggagatccc accccaaccc
     1801 tggtacaagt ctacggtcat ccacatgact gttggtggct tcctgccttt cagtgccatc
     1861 tctgtggagc tgtactacat ctttgccacc gtctggggcc gagagcagta cacgctgtac
     1921 ggcatcctct tctttgtctt cgccatcctg ctgagcgtgg gggcctgcat ctccattgcg
     1981 ctcacctact tccagctgtc tggggaagat taccgctggt ggtggcgatc tgtgctaagc
     2041 gttggctcca ctggcctctt catcttcctc tactcagttt tctactatgc tcggcggtcc
     2101 aacatgtcag gggcagtaca gacagtagag ttctttggct actctttact gactggttat
     2161 gtcttcttcc tcatgctggg caccatctcc ttttttagtt ccttaaagtt catccgttat
     2221 atctatgtta acctcaagat ggactgagtt ctgcgtgaca gaactacggc tcttctcctg
     2281 ctctcatcat gccccattga tttcactgga tagcttctct tctgaccgaa ttgtgtgatg
     2341 gcattgtcgc cttccttccc tctttacccc ttggacctcc cttctttggg gaggacctgg
     2401 aaattaaaaa tctctattat ataagaaata tatatatttg aactttttaa gttgccttat
     2461 gttttggtcc tgattttttt ttctttttac aattattaaa ataaaattta ttaagaaaaa
     2521 gga
//
