LOCUS       XM_039108440            1304 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transmembrane 7 superfamily member 2
            (Tm7sf2), transcript variant X1, mRNA.
ACCESSION   XM_039108440
VERSION     XM_039108440.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039108440.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1304
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1304
                     /gene="Tm7sf2"
                     /note="transmembrane 7 superfamily member 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 10 ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 140
                     samples with support for all annotated introns"
                     /db_xref="GeneID:293688"
                     /db_xref="RGD:1311205"
     CDS             309..1181
                     /gene="Tm7sf2"
                     /codon_start=1
                     /product="delta(14)-sterol reductase TM7SF2 isoform X1"
                     /protein_id="XP_038964368.1"
                     /db_xref="GeneID:293688"
                     /db_xref="RGD:1311205"
                     /translation="MLLPLAFATTLTSFIFSLLLYAKALVAPASALAPGGNSGNSVYD
                     FFLGRELNPRLGSFDFKYFCELRPGLIGWVFINLALLMQEAELRGSPSLAMWLVNGFQ
                     LLYVGDALWYEESVLTTMDIIHDGFGFMLVFGDLAWVPFTYSLQAQFLLYHPQPLGLP
                     MALLICLIKAVGYYIFRGANSQKNTFRKNPSDPSVAGLETIPTATGRQLLVSGWWGMV
                     RHPNYLGDLIMALAWSLPCGLSHLLPYFYLLYFTALLVHREARDEQQCLRKYGRAWQE
                     YCKRVPYRIIPYVY"
ORIGIN      
        1 tgagcagcag cttttccacc tcggggactg atgcagaggc gtagccaggc cattgggatg
       61 gggtgggctg tgtttccctg atcgactttg tgaaccattg tttcccggca aaggagagat
      121 catggcttct cgtgaggcct cccaggcccc actggaattc ggggggccgt tgggtggccg
      181 aggggctgga actgaaggac aagagtcgcc tgcgctaccc tattaatggt ttccaggctc
      241 tggtgctaac agccctgttg gtggggctag gggtgtcagt tgggctgccc ctgggggcac
      301 tccctggaat gctcctgccc ctggcctttg cgaccactct caccagcttt atcttcagcc
      361 tccttctcta tgcaaaggct ttggtagctc ctgcctcagc cctggctcct gggggaaact
      421 caggaaattc tgtgtatgac ttctttctcg gacgggagct gaaccctcgc ctcggttcct
      481 ttgacttcaa atatttctgt gagctgcgac ctggcctcat cggctgggtc ttcattaacc
      541 tggccctgct gatgcaggag gcggagcttc gggggagtcc ttcactggct atgtggctgg
      601 tcaatggctt ccagttgctg tatgtgggtg atgccctctg gtatgaggag tctgttctca
      661 ccaccatgga cataatacat gatggttttg gcttcatgct ggtctttgga gacctggcct
      721 gggtaccatt cacctacagc ctgcaggccc agttcctgtt gtaccatcca cagcctctgg
      781 gattgcccat ggccttgctc atctgcctca ttaaggctgt tggttactac atcttccgag
      841 gggccaattc ccagaaaaat acattcagaa agaatccttc tgaccccagt gtggctggtc
      901 ttgagaccat ccctactgcc acggggaggc agctgttggt gtctgggtgg tggggtatgg
      961 ttcgacaccc caactacctg ggagacctca tcatggctct ggcttggtcc ttgccctgtg
     1021 ggctgtccca cctgctgccc tacttctacc tgctctactt cactgcactg ctggtgcacc
     1081 gcgaggcccg agatgagcag cagtgcctgc gaaagtatgg ccgtgcctgg caggaatact
     1141 gcaagcgcgt gccttaccga atcataccgt atgtctactg aagcagaacc agttctactc
     1201 ggcagggatg ctcagcacgt tgaaaacaag aacgttgaaa gcaagaggga gccactgctc
     1261 ccagaaggaa atttttccct gttgaataaa tgttttcaac cttt
//
