LOCUS       XM_039082370            1487 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transmembrane 6 superfamily member 1
            (Tm6sf1), transcript variant X5, mRNA.
ACCESSION   XM_039082370
VERSION     XM_039082370.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1487
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1487
                     /gene="Tm6sf1"
                     /note="transmembrane 6 superfamily member 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 22 ESTs, 2 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     101 samples with support for all annotated introns"
                     /db_xref="GeneID:361600"
                     /db_xref="RGD:1307978"
     CDS             169..837
                     /gene="Tm6sf1"
                     /codon_start=1
                     /product="transmembrane 6 superfamily member 1 isoform X4"
                     /protein_id="XP_038938298.1"
                     /db_xref="GeneID:361600"
                     /db_xref="RGD:1307978"
                     /translation="MSIVVFVPGNIVGKYGTRICPAFFLSIPYTCLPVWAGFRIYNQP
                     SENYNYPSKVLQEAQAKTLLRRPFDLVLVMCLFLATGFCLFRGLIALDCPAELCRLYT
                     QFQEPYLKDPAAYPKIQMLAYMFYSVPYFVIALYGLVVPGCSWMPDITLVHAGGLAQA
                     QFSHIGASLHARTAYVYRVPEEAKIFFLALNVAYGVLPQLLAYRCTYSPEFFIRTKAD
                     EKLE"
ORIGIN      
        1 cacatgatct gctactggga tggctctgtt cattacctga tgtacctggt gatggtggct
       61 gccatagcat gggagtaagt tagctctcct ggtggctgtt accctttgca actccacaag
      121 ggggaaagtt acagaaccat tggcctatac tgggtgggat ccattataat gagcattgtg
      181 gtttttgtgc ctggaaacat cgtaggaaaa tatgggacac ggatttgccc tgcatttttc
      241 ttaagcatac catatacgtg tcttccggtc tgggctggct tcagaatcta taatcaacca
      301 tcagaaaact ataattatcc ctcaaaggtt cttcaagaag cccaagcaaa gaccctgctg
      361 agaagaccat ttgacttagt gttggtcatg tgtcttttct tggcaactgg attttgcctg
      421 ttcagaggct tgatcgcttt ggactgccca gctgagctct gccgactcta cacacagttt
      481 caggagccct acctaaagga ccctgctgct tacccgaaaa tccagatgct ggcatacatg
      541 ttctattctg tcccttactt tgtgattgca ctctatggct tagtggtccc tggatgttca
      601 tggatgcccg atataaccct ggtccatgct ggaggtctag ctcaggctca gttttctcac
      661 atcggtgcgt cccttcatgc cagaactgct tatgtctaca gagtccctga agaagcgaaa
      721 atcttttttc tagcattaaa cgtagcatat ggagttcttc ctcagctctt ggcttaccgt
      781 tgtacctaca gtcccgagtt cttcataaga accaaggcag atgaaaagct ggaatgaaca
      841 tacctcacgt tgtctctgac ctgttatgga actggcgcta gctctccttt atcccctccc
      901 agacacgaat actcacaagg atacacactt gctttgcagc atacgtgtga gtgaaactac
      961 tcgtattgaa tgggtatatt ttcggttttg aaagaaaatt aaagctgaga aagagcttgt
     1021 ttaaggaaat atatcaacat ttgtctgtga atgtgaccat tgatcttaac attgtttgca
     1081 cacagtacgt gtgaaaagta caactctagt gcctacaaaa accataaaaa tgaagctatt
     1141 cagaagtgac taaccatatt cactatgcat aggaaagaat tcaaagtagc agttacaggt
     1201 tggagaaata gcttcatatg aaatgtatga gttgacaatc ctaatataaa tgccagatca
     1261 tcacaatatt tttaaattga ttcaagtgtt ttcatatgga aagtgtatta tttattgctg
     1321 ttttaaaaat tgctgtcaaa acttctattg aatgtaaaca gctaggatga cacacatcaa
     1381 cttcattagt tgccttaatg aacacttgtt tcataggtgg ctggctgatt atttctcttg
     1441 tgtttctgtg tatatcttca ataaaattat tttttggtgc ttatgaa
//
