LOCUS       NM_001395119            3121 bp    mRNA    linear   ROD 09-APR-2024
DEFINITION  Rattus norvegicus transmembrane 6 superfamily member 1 (Tm6sf1),
            mRNA.
ACCESSION   NM_001395119 XM_006229441
VERSION     NM_001395119.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3121)
  AUTHORS   Tam,W.Y., Jiang,L. and Kwan,K.M.
  TITLE     Transmembrane 6 superfamily 1 (Tm6sf1) is a novel lysosomal
            transmembrane protein
  JOURNAL   Protoplasma 252 (4), 977-983 (2015)
   PUBMED   25422095
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Jun 3, 2021 this sequence version replaced XM_006229441.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643289.2134.1,
                                           SRR26643285.2630.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-492               JAXUCZ010000001.1  145209585-145210076
            493-596             JAXUCZ010000001.1  145213767-145213870
            597-694             JAXUCZ010000001.1  145215875-145215972
            695-798             JAXUCZ010000001.1  145221261-145221364
            799-881             JAXUCZ010000001.1  145223695-145223777
            882-1003            JAXUCZ010000001.1  145224348-145224469
            1004-1108           JAXUCZ010000001.1  145226460-145226564
            1109-1201           JAXUCZ010000001.1  145228128-145228220
            1202-1321           JAXUCZ010000001.1  145228390-145228509
            1322-3121           JAXUCZ010000001.1  145235926-145237725
FEATURES             Location/Qualifiers
     source          1..3121
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q31"
     gene            1..3121
                     /gene="Tm6sf1"
                     /note="transmembrane 6 superfamily member 1"
                     /db_xref="GeneID:361600"
                     /db_xref="RGD:1307978"
     exon            1..492
                     /gene="Tm6sf1"
                     /inference="alignment:Splign:2.1.0"
     CDS             401..1513
                     /gene="Tm6sf1"
                     /codon_start=1
                     /product="transmembrane 6 superfamily member 1"
                     /protein_id="NP_001382048.1"
                     /db_xref="GeneID:361600"
                     /db_xref="RGD:1307978"
                     /translation="MSASAATGVFVLSLSAIPVTYIFNHLAAQHDSWTIVGVAALILL
                     LVALLARVLVRRKPPRDPLFYVYAVFGFTSVVNLIIGLEQDGIIDGFMTHYLREGEPY
                     LNTAYGHMICYWDGSVHYLMYLVMVAAIAWEESYRTIGLYWVGSIIMSIVVFVPGNIV
                     GKYGTRICPAFFLSIPYTCLPVWAGFRIYNQPSENYNYPSKVLQEAQAKTLLRRPFDL
                     VLVMCLFLATGFCLFRGLIALDCPAELCRLYTQFQEPYLKDPAAYPKIQMLAYMFYSV
                     PYFVIALYGLVVPGCSWMPDITLVHAGGLAQAQFSHIGASLHARTAYVYRVPEEAKIF
                     FLALNVAYGVLPQLLAYRCTYSPEFFIRTKADEKLE"
     exon            493..596
                     /gene="Tm6sf1"
                     /inference="alignment:Splign:2.1.0"
     exon            597..694
                     /gene="Tm6sf1"
                     /inference="alignment:Splign:2.1.0"
     exon            695..798
                     /gene="Tm6sf1"
                     /inference="alignment:Splign:2.1.0"
     exon            799..881
                     /gene="Tm6sf1"
                     /inference="alignment:Splign:2.1.0"
     exon            882..1003
                     /gene="Tm6sf1"
                     /inference="alignment:Splign:2.1.0"
     exon            1004..1108
                     /gene="Tm6sf1"
                     /inference="alignment:Splign:2.1.0"
     exon            1109..1201
                     /gene="Tm6sf1"
                     /inference="alignment:Splign:2.1.0"
     exon            1202..1321
                     /gene="Tm6sf1"
                     /inference="alignment:Splign:2.1.0"
     exon            1322..3121
                     /gene="Tm6sf1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccctcggatc tggctccacc ctctgctggc ccttggctca gcccagctcg gttccagctc
       61 gaggatgccc agctccgttc tgtgacccgc gtccttcgcc cggcccctcc ttctctcact
      121 aaagcaaggg tcctgggccg cttgtcttgt cgcggtggct gcggagtccc tgcgttcgtt
      181 agcaggagcc cggtggggac gcctctgggg atagtaccgc ggccctagcg cacggggtgg
      241 tgcctctgcg cgcgcggagc agctgcaggc gacggggacg cgcagaggag acgcggccgg
      301 gggccgcctg gaagggcagt ggtgaggggc gcggcgccgc cggaagctgg gacaggggcc
      361 cctgggcgcg atgcggtgaa agagcgaccc gaaggtggcg atgagtgcct ctgcggccac
      421 gggggttttt gtgctctccc tctcagccat tccagtcacc tacatcttca accacctggc
      481 ggcccagcac gattcctgga ccattgttgg ggttgctgcc ctcatcctgc tcctggtggc
      541 ccttttggct cgggtccttg tcagaagaaa accaccgagg gaccctctgt tctacgtgta
      601 tgcggtgttt ggatttacca gcgtggtgaa cctcatcata ggcttggagc aagatggcat
      661 catcgatggg tttatgacac actacctgag agagggtgaa ccatatctga acacggccta
      721 tgggcacatg atctgctact gggatggctc tgttcattac ctgatgtacc tggtgatggt
      781 ggctgccata gcatgggagg aaagttacag aaccattggc ctatactggg tgggatccat
      841 tataatgagc attgtggttt ttgtgcctgg aaacatcgta ggaaaatatg ggacacggat
      901 ttgccctgca tttttcttaa gcataccata tacgtgtctt ccggtctggg ctggcttcag
      961 aatctataat caaccatcag aaaactataa ttatccctca aaggttcttc aagaagccca
     1021 agcaaagacc ctgctgagaa gaccatttga cttagtgttg gtcatgtgtc ttttcttggc
     1081 aactggattt tgcctgttca gaggcttgat cgctttggac tgcccagctg agctctgccg
     1141 actctacaca cagtttcagg agccctacct aaaggaccct gctgcttacc cgaaaatcca
     1201 gatgctggca tacatgttct attctgtccc ttactttgtg attgcactct atggcttagt
     1261 ggtccctgga tgttcatgga tgcccgatat aaccctggtc catgctggag gtctagctca
     1321 ggctcagttt tctcacatcg gtgcgtccct tcatgccaga actgcttatg tctacagagt
     1381 ccctgaagaa gcgaaaatct tttttctagc attaaacgta gcatatggag ttcttcctca
     1441 gctcttggct taccgttgta cctacagtcc cgagttcttc ataagaacca aggcagatga
     1501 aaagctggaa tgaacatacc tcacgttgtc tctgacctgt tatggaactg gcgctagctc
     1561 tcctttatcc cctcccagac acgaatactc acaaggatac acacttgctt tgcagcatac
     1621 gtgtgagtga aactactcgt attgaatggg tatattttcg gttttgaaag aaaattaaag
     1681 ctgagaaaga gcttgtttaa ggaaatatat caacatttgt ctgtgaatgt gaccattgat
     1741 cttaacattg tttgcacaca gtacgtgtga aaagtacaac tctagtgcct acaaaaacca
     1801 taaaaatgaa gctattcaga agtgactaac catattcact atgcatagga aagaattcaa
     1861 agtagcagtt acaggttgga gaaatagctt catatgaaat gtatgagttg acaatcctaa
     1921 tataaatgcc agatcatcac aatattttta aattgattca agtgttttca tatggaaagt
     1981 gtattattta ttgctgtttt aaaaattgct gtcaaaactt ctattgaatg taaacagcta
     2041 ggatgacaca catcaacttc attagttgcc ttaatgaaca cttgtttcat aggtggctgg
     2101 ctgattattt ctcttgtgtt tctgtgtata tcttcaataa aattattttt tggtgcttat
     2161 gaagataaac tttattaatt ttgaagcatt ttatatatac attttcatga caaattttga
     2221 actttttatt taagaaatct gtgccaggta atggtggcac acacctttaa tcccagcact
     2281 caggattcag agacaggctg atatctgagt tcaaggccgg cctggtctac agagtgagtt
     2341 ccaggaaacc agggctacac agagaaaccc tgtctcaaac aaacaaacaa aaaacctttg
     2401 ttatatcttc caatttaaat tgttatctaa gttctccata tgttttgcat tacaatgaag
     2461 atatcttttg acaaatttca ttttaaaata aaatacttaa aatgaaaaag taccttttaa
     2521 agaaaatagc tgacttgaca gcctgtcttt aacgaatttt ccatacttgg aaatgtgtga
     2581 gtacgttggg gagccattga tagctaaatg acaggaataa gcctgaagga cggtgatgtc
     2641 gcaggggcag tagactgact ggtgcatcta agcctcagag ccctgcatca ccttcatcat
     2701 cacgaccacg ctgggattta agtcttcttc tgttttctct tcatgttcat tagttcttca
     2761 acacggtaag aacacccaaa gcaaacagga tgcacgtaag gctgtgtgta aacacagtgt
     2821 ccactgagct ggtgttttct tagacatgca gacagatgct acggtttctc cctcctgtcc
     2881 ctcccagtgt tttcgattaa cctaacatcc agagtattta aaagaaaaat gatagaaaaa
     2941 ataagattct cacctgcact tattctaatg tcagtttgct gtccaccttc gctataacac
     3001 aagaattaca tcaatacttc acattacaca tatggagcca aatgacactg actcaggtgt
     3061 ttacaacctc aaaccttact cccaggacac attccaataa atttattctg taaaaacaat
     3121 a
//
