LOCUS       XM_039102015            1246 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus transmembrane 4 L six family member 1
            (Tm4sf1), transcript variant X1, mRNA.
ACCESSION   XM_039102015
VERSION     XM_039102015.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039102015.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1246
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1246
                     /gene="Tm4sf1"
                     /note="transmembrane 4 L six family member 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 18 ESTs, 3 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 31 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:295061"
                     /db_xref="RGD:1309652"
     CDS             36..476
                     /gene="Tm4sf1"
                     /codon_start=1
                     /product="transmembrane 4 L6 family member 1 isoform X1"
                     /protein_id="XP_038957943.1"
                     /db_xref="GeneID:295061"
                     /db_xref="RGD:1309652"
                     /translation="MLEMLLPAFLFIRLEEEDCCGCCGYENYGKRCSMLSSVLAALIG
                     ITGSGYCVIVASLGLAEGPKCSDANGVWNYTFASTEGQYLLDSSMWSKCYEPKHIVEW
                     HVTLFSILLAFAAIEFILCLIQVINGVLGGTCGYCCSRQQQYNC"
ORIGIN      
        1 agaaatgtag gcacatttga ctttgcccac ttaaaatgtt agagatgctc ctgccggcgt
       61 ttttgttcat tcggctggag gaagaggact gttgtggctg ctgcggctat gaaaactacg
      121 gcaagagatg ctcgatgctc tcttctgtac tggctgctct gattggaatc acgggatctg
      181 gctactgtgt tattgtggca tcgctgggtt tggcagaagg accaaagtgt agcgatgcca
      241 acggagtgtg gaactacacc tttgccagca ctgagggaca gtaccttctg gattcctcta
      301 tgtggtccaa gtgctatgag cccaagcata ttgtggagtg gcatgtgact ctattttcta
      361 tcctcttggc ttttgctgcc attgaattca tcttgtgtct cattcaagta ataaacggag
      421 tgcttggggg cacgtgtggc tattgctgct ctcgccaaca gcaatataac tgctaaaaaa
      481 gaacagaaga cagattggca tgcttcctgt atttcattgt aatttgtata ttttacctgt
      541 gttgtgagac tttgcaccat tgtgtggtat cccacccttt ctgctttcat aaggaaatgt
      601 gctgacatca tggcatgatg tcagtgctta cattcataaa acaaactttg gtttgaagaa
      661 tgtgacagca aactgcactc tctcagaagg gattttacag acttaatgac tgttctcagc
      721 atagctgaga taaactcttc aatgtttgag ataaaaaatc atatctaact attgtgcata
      781 tgtgcatttg ttttttttta aataaaagac ctctggcttc cttttaaaga tcaagaagga
      841 taaagaagga tatattttat tgtttatatg ctgttaccct tttgtatgtg aacacgtctc
      901 taagagaccc aaagtgagag aaaagcactt gcctgattaa gaaatcttat tgagaaagcg
      961 ctaacacgag tatggcagag aaactatgta aagctgtcag tggttgtgaa cactactaga
     1021 tgctgaagct ttctagcatg tagaaagctt tttgcccttc aaagtcaaag gctgtttctt
     1081 taaagaagaa ggtcaggata gttagacaag aagggaaatg agaaatggaa aaaagtggtt
     1141 gatcatcatg gtgggaaaat gggagaggta aagcagggtc aggaagctca caagggaatg
     1201 cttcccagac ttggttgttg acaataaagt taaggattca tcacca
//
