LOCUS       XM_573065               1223 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus T-cell leukemia, homeobox 3 (Tlx3),
            mRNA.
ACCESSION   XM_573065
VERSION     XM_573065.7
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 31, 2024 this sequence was replaced by
            NM_001427590.1.
            
            On Jan 21, 2021 this sequence version replaced XM_573065.6.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1223
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1223
                     /gene="Tlx3"
                     /note="T-cell leukemia, homeobox 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     ESTs, 5 Proteins, and 92% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:497881"
                     /db_xref="RGD:1564190"
     CDS             1..876
                     /gene="Tlx3"
                     /codon_start=1
                     /product="T-cell leukemia homeobox protein 3"
                     /protein_id="XP_573065.4"
                     /db_xref="GeneID:497881"
                     /db_xref="RGD:1564190"
                     /translation="MEAPASAQTPHPHEPISFGIDQILNSPDQDSAPAPRGPDGASYL
                     GGPPGGRPGAAYPSLPASFAGLGAPFEDAGSYSVNLSLAPAGVIRVPAHRPLPGAVPP
                     PLPSALPAMPSVPTVSSLGGLNFPWMESSRRFVKDRFTAAAALTPFTVTRRIGHPYQN
                     RTPPKRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRR
                     TKWRRQTAEEREAERQQASRLMLQLQHDAFQKSLNDSIQPDPLCLHNSSLFALQNLQP
                     WEEDSSKVPAVTSLV"
ORIGIN      
        1 atggaggcgc ccgccagcgc gcagacccca cacccgcacg agcccatcag cttcggcatc
       61 gaccaaatcc tcaacagccc ggaccaggac agcgcgcccg ccccgcgggg ccccgacggc
      121 gccagctacc tgggagggcc ccccgggggc cgtccgggcg ccgcgtaccc gtctctgccc
      181 gcctcgtttg cgggcctcgg cgcgcccttc gaggacgcgg gatcttacag tgtcaaccta
      241 agcctggccc ccgccggcgt gatccgggtg ccagcgcaca ggccgctccc tggggctgtg
      301 ccgccgcctc tgcctagcgc gctgcccgcc atgccctccg tgcccacggt ctccagcctg
      361 ggcggcctca atttcccctg gatggagagc agtcgccgct ttgtaaagga ccgcttcaca
      421 gcggcggccg cgctcacgcc cttcaccgtg acccggcgca ttggccaccc ctaccagaac
      481 cggacgccgc ccaagcgtaa gaagccgcgc acatcctttt cccgggtgca gatctgtgag
      541 ctggaaaagc gcttccatcg ccaaaagtac ctggcctcgg ccgagagggc ggcgctcgca
      601 aagtccctca aaatgacgga cgcgcaggtc aagacctggt tccaaaatcg gaggaccaag
      661 tggcggcggc agacggcgga ggagcgggag gcggagcggc agcaggcgag ccggctcatg
      721 ctgcagctgc aacacgacgc cttccagaag agcctcaacg actccatcca gcccgacccg
      781 ctctgtctgc acaactcgtc gctctttgct ctgcagaatc tgcagccctg ggaggaggac
      841 agttccaagg tccccgctgt cacctctctg gtgtgagcca ccggcgtgca ctgtagctac
      901 ggatcgccgc ccccaccagg cggggcaccc gggtccccca gccgggctgg ggagggaagc
      961 tgggccgaga ggggtagggc ggcccgactc gcgtgggcct tggggcgcgc agcacagcgc
     1021 cggccgcgga aaggggctgg gcccaggtcc tcgcggctgc acaatcggag ccccccgccc
     1081 tgcgccccgt cccgccccag gcccgggcct gacaaagaag cgccttacgt tactccgccc
     1141 cgcgcccgca cccccgggct gggcgcctgt attatacttt gtacttttgc ccaaacgtgt
     1201 aaataataaa agttttggct ttt
//
