LOCUS       XM_006241027            2070 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus TLE family member 6, subcortical
            maternal complex member (Tle6), transcript variant X1, mRNA.
ACCESSION   XM_006241027
VERSION     XM_006241027.4
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086025) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006241027.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2070
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..2070
                     /gene="Tle6"
                     /note="TLE family member 6, subcortical maternal complex
                     member; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 9 ESTs, 5 long SRA reads"
                     /db_xref="GeneID:299637"
                     /db_xref="RGD:1561530"
     CDS             301..1941
                     /gene="Tle6"
                     /codon_start=1
                     /product="transducin-like enhancer protein 6 isoform X1"
                     /protein_id="XP_006241089.2"
                     /db_xref="GeneID:299637"
                     /db_xref="RGD:1561530"
                     /translation="MEQLPEELKIILSEMTAKLNNISSLVENFQATGVLSRTPHISKM
                     VKTTQNSAKKEDKPVPEPADPQNPEFKAIPGPQLSTRRRFLSEVDEPQDPQPVWDKEP
                     HFWQGSLTQEIWKFFMDSRQENQHGGKVFSQESKDSGLRYSKPEPQPRHRNSLSDSDD
                     PILIKSPSDLLSDYQEDISEPQFETQVNGRPGCRHGKGGHKPAGPASFFVLQESSGRA
                     HEFLNPLFWDSEVPGTSLWQSERFTVPQALQKVRVLKHQELLLAIAVSSFTRHVFTCS
                     QSGIKVWNLMSQVAEDRHPESHLQCDGVQPNRGYLRTCLLSSNSRTLFAGGYNLPGVF
                     VWDLAARSLYEKYQLPCDGLSCQALASTKENMVFAGFTDGTVRIWDLRTQEIVRDLNS
                     PAGAAKCLVIKDDSVWMGGLDACLRCWDLRVAKMSLEYPVQSQIMSLSHSVTEDWLLL
                     GLADGQHCLFNSRERNQVLTVGTKDQTILRLSFSPNGQWWVSVGMDNLITVHSMPMGA
                     KLFQVPEAAAVRCFDITENSRLIVTGSGDCASIYHIKY"
     polyA_site      2070
                     /gene="Tle6"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 caccttgggt gcagggggcg tggtgtgggt gtgggcgtgg tggtgcttgg cctggactag
       61 aggggcgggg tgagaggggt caaatggccc ggggcccagc acgagggtct tcctcctggc
      121 ctgaacttgg ctgacttctg aggcttcctc tgggatccct tgggcctccc caacctctgt
      181 agtggacctc gtctggtttg tgacctcaag actcttcaca gccaaagcaa tgacactttt
      241 ggtggaattt tgctgaaagg aacagaggct tccaactcct ctggtcgatt tttgtccatc
      301 atggagcagc tgcctgagga actcaaaatc atcctctctg aaatgacggc caagctaaac
      361 aacatctcca gcctggtgga aaacttccag gcgactgggg tcctcagcag gaccccacat
      421 atctcgaaga tggtcaagac cacccagaac tcggctaaga aggaagacaa gcctgtccca
      481 gagcctgcgg acccccagaa ccccgagttc aaagccatcc cagggcctca gctatccacc
      541 agacgtcggt tcctctcaga ggttgacgag ccccaggatc cacagcctgt ctgggacaag
      601 gagccccatt tctggcaagg ctccctgacc caggaaatct ggaaattttt catggacagc
      661 cgccaagaga accaacacgg gggcaaggtt ttctcacagg aaagtaaaga ctcaggcctg
      721 cgttactcta aaccggaacc tcagcccagg cacagaaaca gcctgagtga ctctgatgac
      781 cccattctga tcaagtctcc ctcagacctg ctaagtgatt accaagaaga catcagtgag
      841 ccccagtttg agacccaggt gaatgggagg cctggatgta gacatgggaa gggaggtcac
      901 aagccagcag ggccagcttc tttctttgta ctgcaggagt cttctggaag agctcatgaa
      961 tttctgaatc ccttgttctg ggactctgaa gtgccaggca catcactctg gcaatcagag
     1021 aggttcactg tcccgcaagc gctgcagaag gtgcgtgtgc tgaaacacca ggagctgctg
     1081 ttggccatag ccgtgagctc cttcacgcgg cacgtcttca cctgcagcca gagtggcatc
     1141 aaggtgtgga acctcatgag ccaggtagcc gaggacagac accctgaaag ccacttgcaa
     1201 tgtgacggcg tccagcctaa caggggatac ctgcgcacct gcctgctgtc ctccaacagc
     1261 aggaccctgt tcgcgggtgg atataacctg cccggcgtgt ttgtgtggga cctggcagcc
     1321 cggtccctgt atgaaaagta ccaactgccc tgcgacggcc tgtcctgcca ggcgctggcc
     1381 agcacaaagg agaacatggt ctttgctggc ttcacagatg gcacagtcag gatatgggac
     1441 ctgcggactc aggaaatagt cagggacctc aacagccctg ccggtgcagc caaatgcctt
     1501 gtgatcaagg atgacagtgt ctggatgggg ggtctggacg cctgtctgcg atgctgggac
     1561 ctgcgggtag ccaagatgtc gctggagtat ccggtccagt cccagatcat gagcctgtct
     1621 cacagtgtga ctgaagactg gctgctgctg ggtctggccg atggccagca ctgcctcttc
     1681 aacagcaggg agaggaacca ggtgctcact gtgggtacca aggaccagac catcttaagg
     1741 ctcagcttct ccccaaacgg ccagtggtgg gtgagtgtag gtatggacaa cctcatcacc
     1801 gtccacagca tgcccatggg agcgaaactg tttcaggtcc ctgaggctgc cgctgtgaga
     1861 tgctttgaca tcactgagaa cagcaggctg atcgtcacag gatctgggga ctgtgcctcc
     1921 atatatcaca tcaagtactg acagcttcaa ctcccctccc ctaactgcac agtggtggat
     1981 ggccagggtg tgaagggtct gcgatgcttc cagagacttc catgaggtgt gcagaccctg
     2041 agtcataggt aataaagcat tttaaaaggc
//
