LOCUS       XM_039106712            1110 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus TBC/LysM-associated domain containing
            2 (Tldc2), transcript variant X1, mRNA.
ACCESSION   XM_039106712
VERSION     XM_039106712.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039106712.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1110
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1110
                     /gene="Tldc2"
                     /note="TBC/LysM-associated domain containing 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 Protein, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 7 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:502689"
                     /db_xref="RGD:1561343"
     CDS             450..1103
                     /gene="Tldc2"
                     /codon_start=1
                     /product="TLD domain-containing protein 2 isoform X1"
                     /protein_id="XP_038962640.1"
                     /db_xref="GeneID:502689"
                     /db_xref="RGD:1561343"
                     /translation="MKGRQWRYTQLPTEMEDTLSGEEGEEEEEEEPAPAPQDPVEPQL
                     TEASQVLGASEIKQLSLHLPPRVTGHPWNLIFCTSRDGFSLQRLYRQMEGHSGPVLLL
                     LRDQDGQMFGAFSSSALRLSKGFYGTGETFLFSFSPQLKVFKWTGHNSFFVKGDLDSL
                     MMGSGRCVSLSPTSWGSPCPSPKGAAGGMGRLPSSHALWHQHHSPSPEGHMLSDILV"
ORIGIN      
        1 cgtgcatgtc acacatgcat gtactcacac aagtgcacac atgccacagt gcacaggcaa
       61 aggtgagagg acaactttca ggagttgctg ttctccatct aaccaatagc ccttctcaca
      121 gcgaccctgg gactcccagc agccacaggg tctccttcct gccctccagt ctgggcagat
      181 ctgtgtaact gggcatctgt caagcctctc gctcatgagc tttctctgtt gctccctctc
      241 tccagccgtg gaatccaaga gccaggtgaa gagtaagggg ggtggggtgg ccacgtgagg
      301 tcagtcccgc caactccagc tctagtcccc actggccacc agacctgaaa ggatgagctt
      361 acagatgctt cactggcggc cttgagccac cacccgtgca tttcctccgc caggcccaag
      421 gactacaccc tgtcctgagc tctgacagaa tgaaaggccg gcaatggcgg tacactcagc
      481 tgcccacaga aatggaggac acactatctg gggaggaggg tgaggaggag gaagaggagg
      541 agccagcccc agccccccag gaccctgtgg agcctcaact gacagaagcc agccaggtcc
      601 taggtgcctc agagattaag cagctcagtc tccacctgcc cccgagagtc actggccacc
      661 cctggaatct gatcttctgc acgtcaaggg atggtttcag tctgcagcga ctataccgac
      721 aaatggaggg tcacagcggg ccagtactgc tgctgttgag agaccaggat ggccagatgt
      781 ttggtgcctt ctcctcctca gctctccgac tcagcaaagg cttctatggt actggagaga
      841 cattcctctt ctccttctcc ccacagctaa aggtctttaa gtggacaggg cacaactctt
      901 tttttgtgaa aggagacctg gactcactga tgatgggcag tggaaggtgc gtgtctctgt
      961 cccccacatc ctggggtagc ccgtgtccct ctcccaaggg tgctgcaggt ggaatgggca
     1021 ggctgccttc ctctcatgcc ctctggcatc agcaccacag cccatcccca gagggccaca
     1081 tgcttagtga catcttagtc tgaagtgagt
//
