LOCUS       NM_001135879            1053 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus TLC domain containing 4 (Tlcd4), mRNA.
ACCESSION   NM_001135879 XM_345284
VERSION     NM_001135879.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1053)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1053)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Oct 16, 2008 this sequence version replaced XM_345284.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.786507.1,
                                           SRR26360181.929205.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760400,
                                           SAMN12840105 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-155               JAXUCZ010000002.1  212004149-212004303 c
            156-245             JAXUCZ010000002.1  212000337-212000426 c
            246-304             JAXUCZ010000002.1  211998027-211998085 c
            305-399             JAXUCZ010000002.1  211995851-211995945 c
            400-473             JAXUCZ010000002.1  211979551-211979624 c
            474-1053            JAXUCZ010000002.1  211974471-211975050 c
FEATURES             Location/Qualifiers
     source          1..1053
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q42"
     gene            1..1053
                     /gene="Tlcd4"
                     /gene_synonym="RGD1563041; Tmem56"
                     /note="TLC domain containing 4"
                     /db_xref="GeneID:365924"
                     /db_xref="RGD:1563041"
     CDS             1..792
                     /gene="Tlcd4"
                     /gene_synonym="RGD1563041; Tmem56"
                     /note="transmembrane protein 56"
                     /codon_start=1
                     /product="TLC domain-containing protein 4"
                     /protein_id="NP_001129351.1"
                     /db_xref="GeneID:365924"
                     /db_xref="RGD:1563041"
                     /translation="MEANTNVVIGTVCCSFVTFQLLFHFISCWFSARVSLGYNSLSTE
                     KKIEWNSRVVSTCHSMLVGIFGLYLFFFDEATIADPLWGDPSLVKINISTASGYLISD
                     LLIILFNWKVIGDKFFIIHHCAGLIAYYFVLKIGVLAYIANFRLLAELSSPFVNQRWF
                     FEVLKYPKFSKVNVINGILMTVVFFIVRIIAIPPMYFYVYSVYGTEPYIRLGSVVHFV
                     WISSCIVLDVMNIMWMIKITKGCMKVISLIRQEKAKDSLQNGKLD"
     exon            1..155
                     /gene="Tlcd4"
                     /gene_synonym="RGD1563041; Tmem56"
                     /inference="alignment:Splign:2.1.0"
     exon            156..245
                     /gene="Tlcd4"
                     /gene_synonym="RGD1563041; Tmem56"
                     /inference="alignment:Splign:2.1.0"
     exon            246..304
                     /gene="Tlcd4"
                     /gene_synonym="RGD1563041; Tmem56"
                     /inference="alignment:Splign:2.1.0"
     exon            305..399
                     /gene="Tlcd4"
                     /gene_synonym="RGD1563041; Tmem56"
                     /inference="alignment:Splign:2.1.0"
     exon            400..473
                     /gene="Tlcd4"
                     /gene_synonym="RGD1563041; Tmem56"
                     /inference="alignment:Splign:2.1.0"
     exon            474..1053
                     /gene="Tlcd4"
                     /gene_synonym="RGD1563041; Tmem56"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggaggcca acactaacgt ggtcatcggc accgtctgct gcagctttgt cacttttcag
       61 cttcttttcc atttcataag ttgctggttt tcagcaagag tctctctggg ctataacagt
      121 ctcagcaccg agaagaagat cgaatggaac tcgagggtag tgtccacgtg ccactctatg
      181 ctggttggga tttttggttt atacctcttc ttcttcgatg aagctactat agctgatcca
      241 ctctggggtg atccatcact tgtgaaaata aatatttcga ctgcttcagg ctacctcatt
      301 tctgatttat tgattatact ttttaattgg aaagtgatcg gagacaaatt ttttataatt
      361 caccattgcg caggactaat tgcatactac tttgtattga aaattggagt gcttgcatac
      421 attgccaatt tccgcctgct tgctgagctt tccagcccct ttgtaaacca gagatggttc
      481 tttgaagtcc tgaagtaccc caagttttcc aaagtcaatg tcatcaatgg aattcttatg
      541 accgtggtct ttttcatcgt gcggatcatc gcgatacctc caatgtactt ctacgtttac
      601 tccgtgtacg gaacagaacc ctacataagg cttggatctg tagtccattt tgtctggatc
      661 tcttcttgta ttgttttaga tgtgatgaac atcatgtgga tgatcaaaat cacaaaagga
      721 tgcatgaaag tcatctctct catcagacaa gagaaagcca aggacagcct tcagaatgga
      781 aaactcgatt aaaggcggct tcatcagaca gctgtgtcca cagaccatct tcattccgct
      841 gtcttgtctg ataggacgag ttctgtgccg gccgctgtca ggcagtgttg ttactgtggc
      901 gctctcagtg ttttcgtttc tcctttcttt cctctttaga caggagaaaa tgcaatttag
      961 ttctcatttc aggatttctt ctttgcttct atatttttag gcatggatgg aaatcgaaag
     1021 gtttaaataa aagttgtaag tagagtggta aaa
//
