LOCUS       NM_001399011            2109 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus TLC domain containing 3A (Tlcd3a), mRNA.
ACCESSION   NM_001399011 XM_002727796
VERSION     NM_001399011.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2109)
  AUTHORS   He,X., Di,Y., Li,J., Xie,Y., Tang,Y., Zhang,F., Wei,L., Zhang,Y.,
            Qin,W., Huo,K., Li,Y., Wan,D. and Gu,J.
  TITLE     Molecular cloning and characterization of CT120, a novel
            membrane-associated gene involved in amino acid transport and
            glutathione metabolism
  JOURNAL   Biochem Biophys Res Commun 297 (3), 528-536 (2002)
   PUBMED   12270127
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Mar 9, 2022 this sequence version replaced NM_001399011.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582419.2906926.1,
                                           SRR22582424.1571446.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMEA5760433
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-164               JAXUCZ010000010.1  61556281-61556444
            165-248             JAXUCZ010000010.1  61556736-61556819
            249-450             JAXUCZ010000010.1  61559298-61559499
            451-546             JAXUCZ010000010.1  61561220-61561315
            547-2109            JAXUCZ010000010.1  61561967-61563529
FEATURES             Location/Qualifiers
     source          1..2109
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q24"
     gene            1..2109
                     /gene="Tlcd3a"
                     /gene_synonym="Fam57a; RGD1307493"
                     /note="TLC domain containing 3A"
                     /db_xref="GeneID:100360533"
                     /db_xref="RGD:1307493"
     exon            1..164
                     /gene="Tlcd3a"
                     /gene_synonym="Fam57a; RGD1307493"
                     /inference="alignment:Splign:2.1.0"
     CDS             43..816
                     /gene="Tlcd3a"
                     /gene_synonym="Fam57a; RGD1307493"
                     /note="protein FAM57A; family with sequence similarity 57,
                     member A"
                     /codon_start=1
                     /product="TLC domain-containing protein 3A"
                     /protein_id="NP_001385940.1"
                     /db_xref="GeneID:100360533"
                     /db_xref="RGD:1307493"
                     /translation="MLLTLASGALFFPGLFALSNWALRRLRPGWTDDDCLTVGTRLVS
                     SVQAVLATGAGLTVITSCSNVVSDRHWLATEYVWFLIPYMIYDFYAMYLCEWCRTKDQ
                     NLRRVTIIRNFLIENRLMVTHHAVILFFLVPISQKLRGELGDFFVGCIFTAELSTPFV
                     SLGRVLIQLKQQHTLLYKVNGILTVTTFLFCRILLFPFMYWSYGQQKGLSLLQVPFNI
                     PLHCNVANAILISPQLYWFSLLCKKAARLFDTAKAKKDG"
     exon            165..248
                     /gene="Tlcd3a"
                     /gene_synonym="Fam57a; RGD1307493"
                     /inference="alignment:Splign:2.1.0"
     exon            249..450
                     /gene="Tlcd3a"
                     /gene_synonym="Fam57a; RGD1307493"
                     /inference="alignment:Splign:2.1.0"
     exon            451..546
                     /gene="Tlcd3a"
                     /gene_synonym="Fam57a; RGD1307493"
                     /inference="alignment:Splign:2.1.0"
     exon            547..2109
                     /gene="Tlcd3a"
                     /gene_synonym="Fam57a; RGD1307493"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agccccgagc acgccgcgca gcgagcggcc gcacccgcat ccatgctgct gacgctggcc
       61 agcggcgcgc tcttcttccc ggggctcttc gcgctcagca actgggcgct gcgccgcttg
      121 cggcccggat ggacagacga cgactgcctg acggtcggca ccaggctagt gtcctccgtg
      181 caggcagtgc tggccaccgg ggcggggctc accgtcatca cctcctgcag caacgtggtc
      241 tcagacaggc actggcttgc cacagaatat gtctggtttt tgattccata tatgatctat
      301 gacttctatg ccatgtacct ctgtgagtgg tgccgaacca aagaccagaa cctcagacgt
      361 gtcaccatta tccgaaactt cctgattgaa aaccgcctta tggtcacaca tcatgcggtc
      421 attctgtttt tccttgtacc tatttcacag aagctccgag gagaacttgg agacttcttt
      481 gtcggatgca tcttcacagc agaactgagt actccgtttg tgtcactggg cagagttctg
      541 atccagttaa agcagcagca tacgcttctt tacaaggtca atggaatcct cacggtgacc
      601 acctttctgt tctgccggat ccttcttttc ccgttcatgt actggtccta tggccaacaa
      661 aaaggactaa gcctgctcca agtgccattt aatatccctt tacactgcaa cgtggccaat
      721 gccatcctca tctctcccca gctctactgg ttctcactgt tgtgcaagaa ggcagccagg
      781 ctctttgaca cggccaaagc caaaaaggat ggttaattac tctcagggtc aggcactcac
      841 gctcgctgcc ttgtctactc agtattccaa ggaccaaatc atgcctgggg tagtctctgc
      901 cttcgggatg ttgataagcc tctggatttg tggttttctt ttttaaatcc ccattacctc
      961 ccccttctaa ccagcctttt gcaaaagcac ttttttttgt tttgttttgt tttgttttgt
     1021 tttgttttgt tttgttttgt tttgtggtga taacttggat cctgtcaaac ctccactgca
     1081 gtaattttaa tgcaagccta aggagccctc cttgggcctg tgacaagagt tctggaaggt
     1141 gaagcactgc tctccccctt tccacccact cagggcaaca cccatactgg gccagaagca
     1201 agtgacaact tagtttttga aacagtgtca ttttccaata ctaggaaaga cattgtgggt
     1261 gtgtctttta ctgtttacta ggcagccctt gtcctcatcc gtacatcaac aacgaattct
     1321 catgcctgct gacttctagt cagagggtct cactgacaaa ggtcaggagg cagggctgag
     1381 aacctgaagc acttgagtag gtcaggaggc cagcagaggc gccagcatct ttgcaggctg
     1441 attttgtaga gaccagtatc aaacttgtga gcttgttgca agtcattacc tacactattt
     1501 cctttttagc acagcctctc atgaccagtt ttctctgtcc acatagacaa aaagctggtc
     1561 tgaaactcca gggacaaagt gaagtgatgg cttctatagt cacttactgg gtaatcccat
     1621 atgacactgc cctttcatac aaaatggata cagatgtctg ctctcgagct tctgaagtat
     1681 catgtaggcc agtgctgcaa gtgcttcctg ctaagacaga cccatttctg tatggaatgt
     1741 acagccattt agccatagca agctagagaa cgggggaagc cagacaggcc agtgcatgtc
     1801 ctgtggacca atgctgttag ctgtgtgcag taggatgtgg tgtagcactg atcacccctc
     1861 accacaggct gggtttgaga ggacctgctg ccaccacctc aggtggcagc aaaaacacta
     1921 cagtgcctta taattcacta tctgtggact tctaaaggac tggatggttt tgtctcaaat
     1981 tttgagtttc agtctttaat aggtgccatt taaaaaacaa aaaaatgctg ttttgtgttt
     2041 tttgtcctgt ttactgtccc tgtatccacg agtcatccac ctggtgatta aattgcacta
     2101 aattctcta
//
