LOCUS       NM_001108203            2589 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus tight junction associated protein 1 (Tjap1),
            mRNA.
ACCESSION   NM_001108203 XM_001063874 XM_039083527 XM_236932
VERSION     NM_001108203.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2589)
  AUTHORS   Tamaki,H., Sanda,M., Katsumata,O., Hara,Y., Fukaya,M. and
            Sakagami,H.
  TITLE     Pilt is a coiled-coil domain-containing protein that localizes at
            the trans-Golgi complex and regulates its structure
  JOURNAL   FEBS Lett 586 (19), 3064-3070 (2012)
   PUBMED   22841714
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000009.1.
            
            On or before Jul 26, 2021 this sequence version replaced
            XM_039083527.1, NM_001108203.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360186.397960.1,
                                           SRR22399484.953047.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-127               JAXUCZ010000009.1  22198996-22199122
            128-230             JAXUCZ010000009.1  22199605-22199707
            231-328             JAXUCZ010000009.1  22216638-22216735
            329-451             JAXUCZ010000009.1  22217882-22218004
            452-480             JAXUCZ010000009.1  22218430-22218458
            481-642             JAXUCZ010000009.1  22219275-22219436
            643-709             JAXUCZ010000009.1  22219641-22219707
            710-817             JAXUCZ010000009.1  22220680-22220787
            818-901             JAXUCZ010000009.1  22220867-22220950
            902-2589            JAXUCZ010000009.1  22221514-22223201
FEATURES             Location/Qualifiers
     source          1..2589
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q12"
     gene            1..2589
                     /gene="Tjap1"
                     /gene_synonym="Tjp4"
                     /note="tight junction associated protein 1"
                     /db_xref="GeneID:316233"
                     /db_xref="RGD:1308708"
     exon            1..127
                     /gene="Tjap1"
                     /gene_synonym="Tjp4"
                     /inference="alignment:Splign:2.1.0"
     exon            128..230
                     /gene="Tjap1"
                     /gene_synonym="Tjp4"
                     /inference="alignment:Splign:2.1.0"
     exon            231..328
                     /gene="Tjap1"
                     /gene_synonym="Tjp4"
                     /inference="alignment:Splign:2.1.0"
     exon            329..451
                     /gene="Tjap1"
                     /gene_synonym="Tjp4"
                     /inference="alignment:Splign:2.1.0"
     CDS             353..1984
                     /gene="Tjap1"
                     /gene_synonym="Tjp4"
                     /note="tight junction protein 4 (peripheral)"
                     /codon_start=1
                     /product="tight junction-associated protein 1"
                     /protein_id="NP_001101673.1"
                     /db_xref="GeneID:316233"
                     /db_xref="RGD:1308708"
                     /translation="MTSAAPAKKPYRKAPPEHRELRLETPVSRLEQQEPLTDAERMQL
                     LQQENEELRRRLASATRRTEALERELEIGQDCLELELGQSREELDKFKDKFRRLQNSY
                     TASQRTNQELEDKLHALIKKAEMDRKTLDWEIVELTNKLLDARNTINKLEELNERYRL
                     DCNLAVQLLKCNKSHFRNHKFADLPCELQDMVRKHLRSGQEVASPSRSPSSSLAPGAV
                     VPTSVIARVLEKPESLLLNSDQSGSAGRPLAEDVFVHVDMSGGDPASPPAPGSPSPQL
                     NGECCSVSIAGDSPEEELPLPAFDKLSPYPTPSPPHPLYPGRKVIEFSEDKIRIPRNS
                     PLPNCTYATRQAISLSLVEDGGERAHCSPVPSSPASAGGSPYHQPSPARSAPSAPASS
                     ASSEEDLLASWQRAFVDRTPPPAAVVQRTAFGRDALPELQLHFPPGHSTAPLPSPRHE
                     RGLVLPSEPDSAFPREEEEEMLNLPVSPEEERQSLLPDKEDTGEGPSPSHVDGRAWPL
                     SSSSRPQRSPKRMGVHHLHRKDSLTQAQEQGTLLS"
     exon            452..480
                     /gene="Tjap1"
                     /gene_synonym="Tjp4"
                     /inference="alignment:Splign:2.1.0"
     exon            481..642
                     /gene="Tjap1"
                     /gene_synonym="Tjp4"
                     /inference="alignment:Splign:2.1.0"
     exon            643..709
                     /gene="Tjap1"
                     /gene_synonym="Tjp4"
                     /inference="alignment:Splign:2.1.0"
     exon            710..817
                     /gene="Tjap1"
                     /gene_synonym="Tjp4"
                     /inference="alignment:Splign:2.1.0"
     exon            818..901
                     /gene="Tjap1"
                     /gene_synonym="Tjp4"
                     /inference="alignment:Splign:2.1.0"
     exon            902..2589
                     /gene="Tjap1"
                     /gene_synonym="Tjp4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcctggtgcg tggggattcc cgcggcccag gcccctaccc ggcctgcccc gcggcaagat
       61 ggctacctga aggagaggcc cccggcggaa agtttgttgt gggatttttg agtagtcgcg
      121 ctggaagctt gaagacccag ggaccccagg gaccccaggg accggaagaa atcacattgc
      181 ctgcttggaa agacgaggta gcagcttgcc ccagcccaaa cccagagcgg gagctcttgg
      241 ctagaggaag tagaggggcc gtgggatgag gagagcggaa ggctaactcc aggagagcag
      301 aacagagaga ggtgccagcg cgcagacggt caccgagcca acaccttcca ggatgaccag
      361 tgctgcccct gctaagaaac cttaccggaa ggcacctccc gagcatcgag agctgcgcct
      421 ggaaacccct gtgtcccggc ttgagcaaca ggagcccttg acggatgcag agaggatgca
      481 acttttgcag caggagaatg aagaacttcg cagacgcctg gcctcagcca ccagacgcac
      541 tgaggccttg gagcgggaac tggaaatcgg gcaagactgc ctggaactgg agttaggaca
      601 gagccgggaa gagctggaca agttcaagga caaattccgc aggctgcaga acagctacac
      661 agcatcccag cggaccaacc aggagctcga ggacaagctg cacgcactga tcaagaaggc
      721 tgagatggac agaaagacgc tggactggga gattgtggag ctgaccaaca agctgctgga
      781 cgccaggaac accatcaaca agctggagga actcaatgag cggtaccggt tggattgcaa
      841 cctggctgtg cagcttctca agtgcaataa gtcccacttc cggaaccaca agtttgctga
      901 tctaccctgt gagctacagg acatggttcg gaaacatctg cgcagtggtc aggaggttgc
      961 cagtcccagc cgcagccctt cttccagcct ggccccagga gctgtggtgc ctacctcagt
     1021 cattgcccgg gtgttggaga aacccgagtc ccttctgctc aattcagacc agtcgggcag
     1081 tgctgggcgc cccttggctg aggatgtatt cgtgcatgtg gacatgagcg ggggtgaccc
     1141 agccagcccc cctgccccgg gcagtccctc tccacaactc aatggggagt gctgctctgt
     1201 gagtattgca ggggactccc cagaggagga gctgcccttg ccagcctttg acaagttgag
     1261 tccctaccct accccatccc caccacaccc attgtaccct ggtaggaagg tgatagagtt
     1321 ctctgaggac aagatccgaa tccctcggaa cagccccctc cccaactgta cctatgccac
     1381 ccggcaggcc atctccttga gcctggtgga ggacggcggt gagcgggcgc actgcagccc
     1441 ggtgcctagc agtcctgcct cagccggagg gtcaccctat caccagccta gtccagctcg
     1501 ctcagcaccg agtgccccag ccagctcagc cagctctgag gaggacctgc tggccagctg
     1561 gcagcgtgca tttgtggacc gcaccccgcc tcctgcggct gtggtccagc gcacagcctt
     1621 tggacgagat gcgctgcctg aactacagct gcacttcccc ccgggccact ctacagcccc
     1681 actaccttcc ccacgccatg agcgtgggct tgtgctgcct tcagaacctg actctgcctt
     1741 tcctcgagaa gaggaagagg aaatgctgaa cctgcctgtc agccctgagg aagagcgcca
     1801 gagcctgctg cctgataaag aggacactgg ggagggacct agcccttccc acgttgatgg
     1861 cagggcctgg cctctctcca gttccagccg cccccagcgc agccccaaga gaatgggagt
     1921 acaccacctg caccgcaagg acagcctaac gcaagcccag gagcagggca ccctgctcag
     1981 ctaggcctgc ccgccttcct accaccacct cagggctaca tttgacccta aactcttcct
     2041 tcagacctgg cagttctgtg agtggagccc acatcaaatc actgactggt gccggcttgc
     2101 ctcatggatt tttcttttcc tttgaatacc tattctccag gggtaacaaa caagtcactt
     2161 gagccccaag ctccttccac cattcattca gcccagctgt tgccatggaa gtgacgggca
     2221 gacttgtcag ttttcatctt ctctcctttc atatctaaga gctctggttg ttgggggagg
     2281 gtgtcttggt gctgctgacc tctattactc ttccccagca tgagctgctc ttaggcctgc
     2341 cccgctggcc ccagagacaa gggcggactc actcagggcg cccctcagct attcccaccc
     2401 tgtcttccag agggagggca tgacttcagg ggcctcaagc tagactctag gtgaggccca
     2461 gccccctctt aaccttggct ctagactgtt actcccagat ttgggaagtt ttcacataat
     2521 aatgactatt ttaaaatcaa ataaaactta ttttacaggg aaggattgct tttctccttc
     2581 ccactttaa
//
