LOCUS       XM_039082798            4572 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus TIR domain containing adaptor protein
            (Tirap), transcript variant X7, mRNA.
ACCESSION   XM_039082798
VERSION     XM_039082798.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4572
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4572
                     /gene="Tirap"
                     /note="TIR domain containing adaptor protein; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 6 ESTs, 4 long SRA reads, 8 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 12 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:680127"
                     /db_xref="RGD:1595496"
     CDS             498..1250
                     /gene="Tirap"
                     /codon_start=1
                     /product="toll/interleukin-1 receptor domain-containing
                     adapter protein"
                     /protein_id="XP_038938726.1"
                     /db_xref="GeneID:680127"
                     /db_xref="RGD:1595496"
                     /translation="MVGLEACAMASSSSVPASSTQSKKPRDKIADWFRQALLKKPKKM
                     PISQESHLSDGSQTATQDGLSPSSGSSPRSHSSSQSQSSTPSCSSGMSPTSPPTHVDS
                     SSSSSSGRWSKDYDVCVCHSEEDLEVAQELVSYLEGSKASLRCFLQFRDAAPGGAIVS
                     ELCQALSGSHCRVLLITPGFLRDPWCKYQMLQALTEAPGSEGCTIPLLSGLTRAAYPP
                     ELRFMYYVDGRGQDGGFYQVKEAVIHYLETLS"
ORIGIN      
        1 cctcgtcccc ttgcccacac acgggacaaa ccgaggctca gggtttcacg gcggtctgag
       61 ggggttcggg tgtccgggtt gagctgcggg tggtggccag gcagccggga ttcccgagca
      121 acgcggatgg actttaagaa acaatataca accaacacac ggaaaagtgc atagatcccg
      181 agtcccacca aaccactttt cacaagctct cttgtgcaac ctgcatcagg aacaatggag
      241 acaccaagac ccgggaagac tgttgaaggc catggtcagc aggaggtgta aatccatgca
      301 gtccacctgt agtcggcagt cttcaccgtt ttatgacatt gtttccctag ctgcctggta
      361 agggctagat cccaaatgcc gtcctggtca ggtgaagcag agaacagtca ctctaccaag
      421 ctcatacctt gatggccgtt ccatgaagct aagactggat ctcttctccc tgccattccc
      481 ccaatgcctg ctctttcatg gttggtttgg aggcctgtgc tatggcttca tcctcctccg
      541 tcccagcctc ctccactcag tccaagaagc ctcgagacaa gatagctgac tggttcaggc
      601 aggctctgtt gaagaagccc aagaagatgc caatctccca ggaaagccac ctcagtgatg
      661 gttcacagac agccacacag gatggtctct caccctccag cggcagttca cctcggagtc
      721 atagttcatc ccagagccaa agctcaaccc cgagctgcag ttcaggaatg tctcctacct
      781 caccaccaac acacgtggac agcagcagca gcagcagcag tggccgttgg agcaaagact
      841 atgatgtctg tgtgtgccac agtgaggagg atttagaggt ggcccaggag cttgtctcct
      901 acttggaggg tagcaaagcc agtctacgct gcttcctgca gtttcgggat gcagccccag
      961 gtggcgccat tgtttctgag ctatgccagg cgctgagtgg tagtcactgc cgcgtgctgc
     1021 tcatcacccc aggcttcctt cgggacccct ggtgcaagta ccagatgctg caggccctga
     1081 cggaagcccc agggtcggag ggatgcacta tacccctgct atccggcctg accagagccg
     1141 cctatccacc ggaactccga ttcatgtact atgtggatgg cagaggccag gatggtggct
     1201 tttatcaagt caaggaggct gttatacact atctggagac actaagttga cacttagagc
     1261 tttcatgagg aaaactggaa atagttcaca gccatcgtta gtccagtaat ggcaggaggc
     1321 atcaggagcc agagccagct gcattctctt catgacacag gatcagattg ccaccagctt
     1381 ccattactga gggctctaca gaactgccag gcagaagatg gggcccaccc ctgaaaggag
     1441 accaggaaga agatggggac tccccaagaa gggcaggagg aagtcaggga ctctccccag
     1501 gaagaccaca aggaagtcag aaattcaagt tgtcaagaga ctatgctatc aggaaggtca
     1561 gcagtcttgt ctgctgctta actggatagg aagctgacac acggctgtgt gctttccctg
     1621 gcatcaggca ctgggggaac aggtaccact cctcaagagg gatgagcctg acattgccca
     1681 gggaagctga gaagaggtgg caagtgtccg gtcctcacac atacacacta ctgctctctt
     1741 tcccagagac atcgactcac ttcacaaagc cggataacac attcagcccc acactgaatt
     1801 tcacctattg aaaaaatgtt attaaaaatg caatcctagg ggcttcagag atagcggctc
     1861 aggggttgag aactcttact gcttttgcag aggatccagg ttcaattccc aggattcaca
     1921 tggcaattca cagccttatc tataactctg cttccagggg atctgatgcc ttctctgacc
     1981 aggatctcct ggggcactgg gtacacatgt ggaacaccta tatagatgca ggcaaaacaa
     2041 tcatacacat aaagaactgt tttttaaaaa ttagaaatgc aaacctagga ctgtagatgg
     2101 agtccatggt agaacacttg cttagcaggc ctgagggctt ggatgctacc tccagcacca
     2161 ccaaaagaaa gaagcaagca cagacccgga aacggctctg aatacataaa caggtaggga
     2221 gaagggaagc cagggtgtgg ggctcagctg gatcaaaacc aacagatcat gggacacctg
     2281 ggccctcaga catctgctag agcccatgtt tcacggtacc tggctttatg ttgaaccgag
     2341 aggaaccgat gttctcaagc tagcaccaga gtgcattccc agggagaggc aaggtgttgc
     2401 ctgtgttctc aataggaaca gaaacatggt cagctgaatg tccttgtctc ccctggcgtg
     2461 taccttgagc ctcttttttt gacacatcct tttactaaaa aaatgttttt aaatcacggg
     2521 ttcctttctt tcttccttcc ttcctttctt tctttctttt ttgttacata caaaacatct
     2581 aaagaatacc ataccatact catgcaccta ctgcctaacg taagaaaacc ttatcactaa
     2641 tatgcttgtt tcctttgtgt cctgaattcc aggcccttca agtttcctaa caaaaataac
     2701 caactattct gagtcttgaa ttattttgag ctgttctttg ttttgttttt taaagattta
     2761 tttattatct atgtaagtac actgtagccg tcttcagaca caccagaaga aggcatctga
     2821 tcccgttaca gatggttgtg agccaccatg tggttgctgg gattttaact caggacctct
     2881 gggagagtga tcttaaccac tgagccacct ctccagccca ttttgagctt ttctatatga
     2941 agtttccata gatgtatgct acccggaaac atttgatttt atgattttat cttctataca
     3001 gattgcatca tgtgtgtttc ctttgtttga catgtttgca aggtgtgtcc atgttgctgt
     3061 gtcacttgtg ggtttccttt tgtttatgta aatcagcagt tttccaccct ttggggtgga
     3121 acgggttgca tatcagatat cctccatatc agatatttac attatgattc ataacagtac
     3181 caaaattatg gttatgaagt agcaatggaa ctaatttcat gattgtggtc aaactacatg
     3241 aggaactaac tgtattaaag ggtcacagtg ttaggaaggt ctcaactact gctttaagat
     3301 caccttaaag tgaattccag ggacttcctc tctaaatttt tagttacaaa cctgtaattc
     3361 atgaggtttg gtttctttct tttaaccatg agcttacttt tttatgtgca ttggtgtttt
     3421 acaggaatgt cagagtgagt catatcccct ggatcaggag ttacagacat tcgtgagctg
     3481 tcatgtgggt gctgggaatt gaacccaggt cctgtagaag aacagccagt gctctcatct
     3541 actgggcctt ctctccagcc ctgcatagta tcttttaaag ctatattttc ctcataatat
     3601 aagatactgc ccatgaagct gtcatcattg ctttctgtgt cttacaaagg ccttcctgtc
     3661 ttattccaca ttttcttcta cattcagtcc tgaaaagaag ttgatctcat tttctgccaa
     3721 agtgtttctg ttcacatcta gacctttcct ctagtcgagt tcttgctgtt tgtccgtttt
     3781 ctgtttttga ttttttaaaa atggtatgta gcccaaactg acatcctcct cattcagctt
     3841 cccggatgct ggactttttt tttttttttt tttttttttg ttcttttttt cggagctggg
     3901 gactgaaccc agggccttgc gcttcctagg caagcgctct gccgctgagc tacatcccca
     3961 gccccgtctt gtaagcagta taaactgccg tgcctagcgt attcttggtt gtcaggttaa
     4021 aatcaattcc tttatcttag tgtccgcccc gcctgtcctc actggtatct gcgatttttc
     4081 tgtttgtttg agacaagatc tcactatgta tccctggctg gccaagaatg cacaatgcaa
     4141 acagactggc ctcagtctca gatctgcctg cctctgcctc cccagcgcag tgcatcagca
     4201 cgcccgtaga ctgctgccgt gtgctgtcat gtgaacacgt ccattgctgg ttctctaggc
     4261 tctttcaggt ataccctgtg ttagtgccat ggcatccttt caaaagcttt aatgccctgc
     4321 gggccagttc ttcccacccg tcttgttcat cgtctaaatc attctgcctt ttcttaattc
     4381 ttacctttct ttctgtgttg tttattcata tacttccagg ttccggggaa agtgtatttt
     4441 tcttggagtt gtattcagtt atggatttga ctaggaagaa gaggtactct cgtgataaag
     4501 ccttcctatt cataagggag catcaccact taggtcctta aatgtatttc agtaaatttg
     4561 aataatactt tt
//
