LOCUS       XM_039082797            4758 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus TIR domain containing adaptor protein
            (Tirap), transcript variant X4, mRNA.
ACCESSION   XM_039082797
VERSION     XM_039082797.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4758
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4758
                     /gene="Tirap"
                     /note="TIR domain containing adaptor protein; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 6 ESTs, 4 long SRA reads, 8 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 12 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:680127"
                     /db_xref="RGD:1595496"
     CDS             684..1436
                     /gene="Tirap"
                     /codon_start=1
                     /product="toll/interleukin-1 receptor domain-containing
                     adapter protein"
                     /protein_id="XP_038938725.1"
                     /db_xref="GeneID:680127"
                     /db_xref="RGD:1595496"
                     /translation="MVGLEACAMASSSSVPASSTQSKKPRDKIADWFRQALLKKPKKM
                     PISQESHLSDGSQTATQDGLSPSSGSSPRSHSSSQSQSSTPSCSSGMSPTSPPTHVDS
                     SSSSSSGRWSKDYDVCVCHSEEDLEVAQELVSYLEGSKASLRCFLQFRDAAPGGAIVS
                     ELCQALSGSHCRVLLITPGFLRDPWCKYQMLQALTEAPGSEGCTIPLLSGLTRAAYPP
                     ELRFMYYVDGRGQDGGFYQVKEAVIHYLETLS"
ORIGIN      
        1 catgggcagg aaagtggctg gtgcgggcgg gagggctgtg gccgaggagc ttccgggagc
       61 cggggcaggg gcacttcccg gcggagcttg ccgcccgcag cgctgggccg cgcagacttt
      121 aagaaacaat atacaaccaa cacacggaaa agtgcataga tcccgagtcc caccaaacca
      181 cttttcacaa gctctcttgt gcaacctgca tcaggaacaa atttatctgt gttcatatgt
      241 ctgtgtaggt gtatgccgta gggggtgcct tggaggacag gtggagttac aggcagttgt
      301 gacccatgtg ggagctggga cctgcaaaaa ctggggttct cttgaaggag gagcaagctc
      361 tcttcagcac tgagccgtct ctccagcccc tggaaaagtc atcttgaatg gtttcctgag
      421 atggagacac caagacccgg gaagactgtt gaaggccatg gtcagcagga ggtgtaaatc
      481 catgcagtcc acctgtagtc ggcagtcttc accgttttat gacattgttt ccctagctgc
      541 ctggtaaggg ctagatccca aatgccgtcc tggtcaggtg aagcagagaa cagtcactct
      601 accaagctca taccttgatg gccgttccat gaagctaaga ctggatctct tctccctgcc
      661 attcccccaa tgcctgctct ttcatggttg gtttggaggc ctgtgctatg gcttcatcct
      721 cctccgtccc agcctcctcc actcagtcca agaagcctcg agacaagata gctgactggt
      781 tcaggcaggc tctgttgaag aagcccaaga agatgccaat ctcccaggaa agccacctca
      841 gtgatggttc acagacagcc acacaggatg gtctctcacc ctccagcggc agttcacctc
      901 ggagtcatag ttcatcccag agccaaagct caaccccgag ctgcagttca ggaatgtctc
      961 ctacctcacc accaacacac gtggacagca gcagcagcag cagcagtggc cgttggagca
     1021 aagactatga tgtctgtgtg tgccacagtg aggaggattt agaggtggcc caggagcttg
     1081 tctcctactt ggagggtagc aaagccagtc tacgctgctt cctgcagttt cgggatgcag
     1141 ccccaggtgg cgccattgtt tctgagctat gccaggcgct gagtggtagt cactgccgcg
     1201 tgctgctcat caccccaggc ttccttcggg acccctggtg caagtaccag atgctgcagg
     1261 ccctgacgga agccccaggg tcggagggat gcactatacc cctgctatcc ggcctgacca
     1321 gagccgccta tccaccggaa ctccgattca tgtactatgt ggatggcaga ggccaggatg
     1381 gtggctttta tcaagtcaag gaggctgtta tacactatct ggagacacta agttgacact
     1441 tagagctttc atgaggaaaa ctggaaatag ttcacagcca tcgttagtcc agtaatggca
     1501 ggaggcatca ggagccagag ccagctgcat tctcttcatg acacaggatc agattgccac
     1561 cagcttccat tactgagggc tctacagaac tgccaggcag aagatggggc ccacccctga
     1621 aaggagacca ggaagaagat ggggactccc caagaagggc aggaggaagt cagggactct
     1681 ccccaggaag accacaagga agtcagaaat tcaagttgtc aagagactat gctatcagga
     1741 aggtcagcag tcttgtctgc tgcttaactg gataggaagc tgacacacgg ctgtgtgctt
     1801 tccctggcat caggcactgg gggaacaggt accactcctc aagagggatg agcctgacat
     1861 tgcccaggga agctgagaag aggtggcaag tgtccggtcc tcacacatac acactactgc
     1921 tctctttccc agagacatcg actcacttca caaagccgga taacacattc agccccacac
     1981 tgaatttcac ctattgaaaa aatgttatta aaaatgcaat cctaggggct tcagagatag
     2041 cggctcaggg gttgagaact cttactgctt ttgcagagga tccaggttca attcccagga
     2101 ttcacatggc aattcacagc cttatctata actctgcttc caggggatct gatgccttct
     2161 ctgaccagga tctcctgggg cactgggtac acatgtggaa cacctatata gatgcaggca
     2221 aaacaatcat acacataaag aactgttttt taaaaattag aaatgcaaac ctaggactgt
     2281 agatggagtc catggtagaa cacttgctta gcaggcctga gggcttggat gctacctcca
     2341 gcaccaccaa aagaaagaag caagcacaga cccggaaacg gctctgaata cataaacagg
     2401 tagggagaag ggaagccagg gtgtggggct cagctggatc aaaaccaaca gatcatggga
     2461 cacctgggcc ctcagacatc tgctagagcc catgtttcac ggtacctggc tttatgttga
     2521 accgagagga accgatgttc tcaagctagc accagagtgc attcccaggg agaggcaagg
     2581 tgttgcctgt gttctcaata ggaacagaaa catggtcagc tgaatgtcct tgtctcccct
     2641 ggcgtgtacc ttgagcctct ttttttgaca catcctttta ctaaaaaaat gtttttaaat
     2701 cacgggttcc tttctttctt ccttccttcc tttctttctt tcttttttgt tacatacaaa
     2761 acatctaaag aataccatac catactcatg cacctactgc ctaacgtaag aaaaccttat
     2821 cactaatatg cttgtttcct ttgtgtcctg aattccaggc ccttcaagtt tcctaacaaa
     2881 aataaccaac tattctgagt cttgaattat tttgagctgt tctttgtttt gttttttaaa
     2941 gatttattta ttatctatgt aagtacactg tagccgtctt cagacacacc agaagaaggc
     3001 atctgatccc gttacagatg gttgtgagcc accatgtggt tgctgggatt ttaactcagg
     3061 acctctggga gagtgatctt aaccactgag ccacctctcc agcccatttt gagcttttct
     3121 atatgaagtt tccatagatg tatgctaccc ggaaacattt gattttatga ttttatcttc
     3181 tatacagatt gcatcatgtg tgtttccttt gtttgacatg tttgcaaggt gtgtccatgt
     3241 tgctgtgtca cttgtgggtt tccttttgtt tatgtaaatc agcagttttc caccctttgg
     3301 ggtggaacgg gttgcatatc agatatcctc catatcagat atttacatta tgattcataa
     3361 cagtaccaaa attatggtta tgaagtagca atggaactaa tttcatgatt gtggtcaaac
     3421 tacatgagga actaactgta ttaaagggtc acagtgttag gaaggtctca actactgctt
     3481 taagatcacc ttaaagtgaa ttccagggac ttcctctcta aatttttagt tacaaacctg
     3541 taattcatga ggtttggttt ctttctttta accatgagct tactttttta tgtgcattgg
     3601 tgttttacag gaatgtcaga gtgagtcata tcccctggat caggagttac agacattcgt
     3661 gagctgtcat gtgggtgctg ggaattgaac ccaggtcctg tagaagaaca gccagtgctc
     3721 tcatctactg ggccttctct ccagccctgc atagtatctt ttaaagctat attttcctca
     3781 taatataaga tactgcccat gaagctgtca tcattgcttt ctgtgtctta caaaggcctt
     3841 cctgtcttat tccacatttt cttctacatt cagtcctgaa aagaagttga tctcattttc
     3901 tgccaaagtg tttctgttca catctagacc tttcctctag tcgagttctt gctgtttgtc
     3961 cgttttctgt ttttgatttt ttaaaaatgg tatgtagccc aaactgacat cctcctcatt
     4021 cagcttcccg gatgctggac tttttttttt tttttttttt tttttgttct ttttttcgga
     4081 gctggggact gaacccaggg ccttgcgctt cctaggcaag cgctctgccg ctgagctaca
     4141 tccccagccc cgtcttgtaa gcagtataaa ctgccgtgcc tagcgtattc ttggttgtca
     4201 ggttaaaatc aattccttta tcttagtgtc cgccccgcct gtcctcactg gtatctgcga
     4261 tttttctgtt tgtttgagac aagatctcac tatgtatccc tggctggcca agaatgcaca
     4321 atgcaaacag actggcctca gtctcagatc tgcctgcctc tgcctcccca gcgcagtgca
     4381 tcagcacgcc cgtagactgc tgccgtgtgc tgtcatgtga acacgtccat tgctggttct
     4441 ctaggctctt tcaggtatac cctgtgttag tgccatggca tcctttcaaa agctttaatg
     4501 ccctgcgggc cagttcttcc cacccgtctt gttcatcgtc taaatcattc tgccttttct
     4561 taattcttac ctttctttct gtgttgttta ttcatatact tccaggttcc ggggaaagtg
     4621 tatttttctt ggagttgtat tcagttatgg atttgactag gaagaagagg tactctcgtg
     4681 ataaagcctt cctattcata agggagcatc accacttagg tccttaaatg tatttcagta
     4741 aatttgaata atactttt
//
