LOCUS       XM_017596000            4729 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus TIR domain containing adaptor protein
            (Tirap), transcript variant X1, mRNA.
ACCESSION   XM_017596000
VERSION     XM_017596000.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_017596000.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4729
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4729
                     /gene="Tirap"
                     /note="TIR domain containing adaptor protein; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 6 ESTs, 5 long SRA reads, 8 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 135 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:680127"
                     /db_xref="RGD:1595496"
     CDS             655..1407
                     /gene="Tirap"
                     /codon_start=1
                     /product="toll/interleukin-1 receptor domain-containing
                     adapter protein"
                     /protein_id="XP_017451489.1"
                     /db_xref="GeneID:680127"
                     /db_xref="RGD:1595496"
                     /translation="MVGLEACAMASSSSVPASSTQSKKPRDKIADWFRQALLKKPKKM
                     PISQESHLSDGSQTATQDGLSPSSGSSPRSHSSSQSQSSTPSCSSGMSPTSPPTHVDS
                     SSSSSSGRWSKDYDVCVCHSEEDLEVAQELVSYLEGSKASLRCFLQFRDAAPGGAIVS
                     ELCQALSGSHCRVLLITPGFLRDPWCKYQMLQALTEAPGSEGCTIPLLSGLTRAAYPP
                     ELRFMYYVDGRGQDGGFYQVKEAVIHYLETLS"
ORIGIN      
        1 catgggcagg aaagtggctg gtgcgggcgg gagggctgtg gccgaggagc ttccgggagc
       61 cggggcaggg gcacttcccg gcggagcttg ccgcccgcag cgctgggccg cgcagacttt
      121 aagaaacaat atacaaccaa cacacggaaa agtgcataga tcccgagtcc caccaaacca
      181 cttttcacaa gctctcttgt gcaacctgca tcaggaacag tgtatgccgt agggggtgcc
      241 ttggaggaca ggtggagtta caggcagttg tgacccatgt gggagctggg acctgcaaaa
      301 actggggttc tcttgaagga ggagcaagct ctcttcagca ctgagccgtc tctccagccc
      361 ctggaaaagt catcttgaat ggtttcctga gatggagaca ccaagacccg ggaagactgt
      421 tgaaggccat ggtcagcagg aggtgtaaat ccatgcagtc cacctgtagt cggcagtctt
      481 caccgtttta tgacattgtt tccctagctg cctggtaagg gctagatccc aaatgccgtc
      541 ctggtcaggt gaagcagaga acagtcactc taccaagctc ataccttgat ggccgttcca
      601 tgaagctaag actggatctc ttctccctgc cattccccca atgcctgctc tttcatggtt
      661 ggtttggagg cctgtgctat ggcttcatcc tcctccgtcc cagcctcctc cactcagtcc
      721 aagaagcctc gagacaagat agctgactgg ttcaggcagg ctctgttgaa gaagcccaag
      781 aagatgccaa tctcccagga aagccacctc agtgatggtt cacagacagc cacacaggat
      841 ggtctctcac cctccagcgg cagttcacct cggagtcata gttcatccca gagccaaagc
      901 tcaaccccga gctgcagttc aggaatgtct cctacctcac caccaacaca cgtggacagc
      961 agcagcagca gcagcagtgg ccgttggagc aaagactatg atgtctgtgt gtgccacagt
     1021 gaggaggatt tagaggtggc ccaggagctt gtctcctact tggagggtag caaagccagt
     1081 ctacgctgct tcctgcagtt tcgggatgca gccccaggtg gcgccattgt ttctgagcta
     1141 tgccaggcgc tgagtggtag tcactgccgc gtgctgctca tcaccccagg cttccttcgg
     1201 gacccctggt gcaagtacca gatgctgcag gccctgacgg aagccccagg gtcggaggga
     1261 tgcactatac ccctgctatc cggcctgacc agagccgcct atccaccgga actccgattc
     1321 atgtactatg tggatggcag aggccaggat ggtggctttt atcaagtcaa ggaggctgtt
     1381 atacactatc tggagacact aagttgacac ttagagcttt catgaggaaa actggaaata
     1441 gttcacagcc atcgttagtc cagtaatggc aggaggcatc aggagccaga gccagctgca
     1501 ttctcttcat gacacaggat cagattgcca ccagcttcca ttactgaggg ctctacagaa
     1561 ctgccaggca gaagatgggg cccacccctg aaaggagacc aggaagaaga tggggactcc
     1621 ccaagaaggg caggaggaag tcagggactc tccccaggaa gaccacaagg aagtcagaaa
     1681 ttcaagttgt caagagacta tgctatcagg aaggtcagca gtcttgtctg ctgcttaact
     1741 ggataggaag ctgacacacg gctgtgtgct ttccctggca tcaggcactg ggggaacagg
     1801 taccactcct caagagggat gagcctgaca ttgcccaggg aagctgagaa gaggtggcaa
     1861 gtgtccggtc ctcacacata cacactactg ctctctttcc cagagacatc gactcacttc
     1921 acaaagccgg ataacacatt cagccccaca ctgaatttca cctattgaaa aaatgttatt
     1981 aaaaatgcaa tcctaggggc ttcagagata gcggctcagg ggttgagaac tcttactgct
     2041 tttgcagagg atccaggttc aattcccagg attcacatgg caattcacag ccttatctat
     2101 aactctgctt ccaggggatc tgatgccttc tctgaccagg atctcctggg gcactgggta
     2161 cacatgtgga acacctatat agatgcaggc aaaacaatca tacacataaa gaactgtttt
     2221 ttaaaaatta gaaatgcaaa cctaggactg tagatggagt ccatggtaga acacttgctt
     2281 agcaggcctg agggcttgga tgctacctcc agcaccacca aaagaaagaa gcaagcacag
     2341 acccggaaac ggctctgaat acataaacag gtagggagaa gggaagccag ggtgtggggc
     2401 tcagctggat caaaaccaac agatcatggg acacctgggc cctcagacat ctgctagagc
     2461 ccatgtttca cggtacctgg ctttatgttg aaccgagagg aaccgatgtt ctcaagctag
     2521 caccagagtg cattcccagg gagaggcaag gtgttgcctg tgttctcaat aggaacagaa
     2581 acatggtcag ctgaatgtcc ttgtctcccc tggcgtgtac cttgagcctc tttttttgac
     2641 acatcctttt actaaaaaaa tgtttttaaa tcacgggttc ctttctttct tccttccttc
     2701 ctttctttct ttcttttttg ttacatacaa aacatctaaa gaataccata ccatactcat
     2761 gcacctactg cctaacgtaa gaaaacctta tcactaatat gcttgtttcc tttgtgtcct
     2821 gaattccagg cccttcaagt ttcctaacaa aaataaccaa ctattctgag tcttgaatta
     2881 ttttgagctg ttctttgttt tgttttttaa agatttattt attatctatg taagtacact
     2941 gtagccgtct tcagacacac cagaagaagg catctgatcc cgttacagat ggttgtgagc
     3001 caccatgtgg ttgctgggat tttaactcag gacctctggg agagtgatct taaccactga
     3061 gccacctctc cagcccattt tgagcttttc tatatgaagt ttccatagat gtatgctacc
     3121 cggaaacatt tgattttatg attttatctt ctatacagat tgcatcatgt gtgtttcctt
     3181 tgtttgacat gtttgcaagg tgtgtccatg ttgctgtgtc acttgtgggt ttccttttgt
     3241 ttatgtaaat cagcagtttt ccaccctttg gggtggaacg ggttgcatat cagatatcct
     3301 ccatatcaga tatttacatt atgattcata acagtaccaa aattatggtt atgaagtagc
     3361 aatggaacta atttcatgat tgtggtcaaa ctacatgagg aactaactgt attaaagggt
     3421 cacagtgtta ggaaggtctc aactactgct ttaagatcac cttaaagtga attccaggga
     3481 cttcctctct aaatttttag ttacaaacct gtaattcatg aggtttggtt tctttctttt
     3541 aaccatgagc ttactttttt atgtgcattg gtgttttaca ggaatgtcag agtgagtcat
     3601 atcccctgga tcaggagtta cagacattcg tgagctgtca tgtgggtgct gggaattgaa
     3661 cccaggtcct gtagaagaac agccagtgct ctcatctact gggccttctc tccagccctg
     3721 catagtatct tttaaagcta tattttcctc ataatataag atactgccca tgaagctgtc
     3781 atcattgctt tctgtgtctt acaaaggcct tcctgtctta ttccacattt tcttctacat
     3841 tcagtcctga aaagaagttg atctcatttt ctgccaaagt gtttctgttc acatctagac
     3901 ctttcctcta gtcgagttct tgctgtttgt ccgttttctg tttttgattt tttaaaaatg
     3961 gtatgtagcc caaactgaca tcctcctcat tcagcttccc ggatgctgga cttttttttt
     4021 tttttttttt ttttttgttc tttttttcgg agctggggac tgaacccagg gccttgcgct
     4081 tcctaggcaa gcgctctgcc gctgagctac atccccagcc ccgtcttgta agcagtataa
     4141 actgccgtgc ctagcgtatt cttggttgtc aggttaaaat caattccttt atcttagtgt
     4201 ccgccccgcc tgtcctcact ggtatctgcg atttttctgt ttgtttgaga caagatctca
     4261 ctatgtatcc ctggctggcc aagaatgcac aatgcaaaca gactggcctc agtctcagat
     4321 ctgcctgcct ctgcctcccc agcgcagtgc atcagcacgc ccgtagactg ctgccgtgtg
     4381 ctgtcatgtg aacacgtcca ttgctggttc tctaggctct ttcaggtata ccctgtgtta
     4441 gtgccatggc atcctttcaa aagctttaat gccctgcggg ccagttcttc ccacccgtct
     4501 tgttcatcgt ctaaatcatt ctgccttttc ttaattctta cctttctttc tgtgttgttt
     4561 attcatatac ttccaggttc cggggaaagt gtatttttct tggagttgta ttcagttatg
     4621 gatttgacta ggaagaagag gtactctcgt gataaagcct tcctattcat aagggagcat
     4681 caccacttag gtccttaaat gtatttcagt aaatttgaat aatactttt
//
